Structure of PDB 7uv9 Chain K Binding Site BS01

Receptor Information
>7uv9 Chain K (length=407) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RYSQRLRRRYRTFDLEEKLHTNKYNANFVTFMEGKDFNVEYIQRGGLRDP
LIFKNSDGLGIKMPDPDFTVNDVKMCVGSRRMVDVMDVNTQKGIEMTMAQ
WTRYYETPEEEREKLYNVISLEFSHTRLENMVQRPSTVDFIDWVDNMWPR
HLKESQTESTNAILEMQYPKVQKYCLMSVRGCYTDFHVDFGGTSVWYHIH
QGGKVFWLIPPTAHNLELYENWLLSGKQGDIFLGDRVSDCQRIELKQGYT
FVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYNIEDRTRVPNKFR
YPFYYEMCWYVLERYVYCITNRSHLTKEFQKESLSMDLEQVHLTHFELEG
LRCLVDKLESLPLHKKCVPTGIEDEDALIADVKILLEELANSDPKLALTG
VPIVQWP
Ligand information
Ligand IDOH0
InChIInChI=1S/C10H19NO4/c1-2-3-4-5-6-9(12)11(15)8-7-10(13)14/h15H,2-8H2,1H3,(H,13,14)
InChIKeyDOYDHAWEPMQVFZ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CCCCCCC(=O)N(O)CCC(O)=O
OpenEye OEToolkits 2.0.7CCCCCCC(=O)N(CCC(=O)O)O
ACDLabs 12.01O=C(O)CCN(O)C(=O)CCCCCC
FormulaC10 H19 N O4
NameN-heptanoyl-N-hydroxy-beta-alanine
ChEMBL
DrugBank
ZINC
PDB chain7uv9 Chain K Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7uv9 Structural basis of paralog-specific KDM2A/B nucleosome recognition.
Resolution3.2 Å
Binding residue
(original residue number in PDB)		I144 Y199 L201 T209 H212 Y222 K229 H284 V286 N298
Binding residue
(residue number reindexed from 1)		I119 Y174 L176 T184 H187 Y197 K204 H259 V261 N273
Annotation score1
Enzymatic activity
Enzyme Commision number 1.14.11.27: [histone H3]-dimethyl-L-lysine(36) demethylase.
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0008270 zinc ion binding

View graph for
Molecular Function
External links
PDB RCSB:7uv9, PDBe:7uv9, PDBj:7uv9
PDBsum7uv9
PubMed36797403
UniProtQ9Y2K7|KDM2A_HUMAN Lysine-specific demethylase 2A (Gene Name=KDM2A)

[Back to BioLiP]