Structure of PDB 7jil Chain K Binding Site BS01

Receptor Information
>7jil Chain K (length=121) Species: 986 (Flavobacterium johnsoniae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MVQQESRLKVADNTGAKEVLTIRVLGGTKRRYASVGDKIVVSIKDATPNG
NVKKGAVSTAVVVRTKKEVRRADGSYIRFDDNACVLLNAAGEMRGTRVFG
PVARELREKQFMKIVSLAPEV
Ligand information
>7jil Chain 1 (length=2742) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaauaagggcguauggggaaugccuaggcucucagaggcgaugaaggacg
ugauaagcugcgaaaagcugcggggacuggcacacacagauugauccgca
gauauccgaauggggcaacccgcuauauugaagauauagcacaccgauag
gugggcaaacccgcugaacugaaacaucuaaguaggcggaggagaagaaa
acaaaagugauuccguaaguaguggcgagcgaacgcggauuagcccaaac
cagugcuacggcagugcugggguuguaacaugcagaaccggaaguuacug
gaaagugacgccaaagagggugauagccccguauggguaauaaauguggu
auccugaguagggcgggacacgugaaacccugucugaauucggcgggacc
auccgcuaaggcuaaauacuccugagagaccgauagugaaccaguaccgu
gagggaaaggugaaaagaaccgugaauaacggagugaaauagauccugaa
accauacgcuuacaagcggucggagcccuuucguggggugacggcgugcc
uuuugcauaaugagccuacgaguuaacgcugcuggcaaggauaaguacuu
caguacggauccgcagcgaaagcgagucugaauagggcgcuuuagucagu
aguguuagacgcgaaaccgugugaucuacccaugggcagguugaagcugu
gguaacacacaguggaggaccgaaccgguugacguugaaaagucuucgga
ugaccuguggguaggggugaaaggccaaucaaacucggaaauagcucgua
cuccccgaaaugcauuuaggugcagcguuaguuauaaaguuauacagagg
uagagcuacugauuggaugcgggggcuucaccgcccaccaauuccugaca
aacuccgaaugcuguauaauguucacuaacagugagggcuugggugcuaa
gguccaaguccgagagggaaagaacccagaccaucagcuaagguccccaa
auauaugcuaaguugaaagaacgagguuugucugcccagacagcuaggau
guuggcuuggaagcagcccauuuaaagagcguaacagcucacuagucgag
cggacgagcauggauaauaaucgggcauaagcauauuaccgaagcuaugg
auuugcaaguuugcaagugguaggggagcauucuaacaggguugaagguu
uuucguaaggagggcuggacugguuagaaaagaaaauguaggcauaagua
acgauaaugcgggcgagaaacccgcacaccgaaaaacuaagguuuccaca
gcuaugcuaaucagcuguggguuagucugguccuaaggcgaacccgaaag
ggacagucgauggcuaacggguuaauauucccguacuacuaauuacugug
auggggugacggagugaugaaagcgccgcgaacugacggaauaguucguu
gaaguaccuagcuauagguccuguaguaaaaugcgcaggaacuggugaaa
uacgauaguacucggagucgacaaagagauagugcgccuaagggcuucca
agaaaaaccucuaaacuucagguaauuaguaccaguaccguaaaccgaca
cagguaguugaggagagaauccuaaggugcucgagauauucauggcuaag
gaauuaggcaaaauagaccuguaacuucgggagaaaggucgcccugagca
aucagggccgcagugaagagguccaggcgacuguuuaucaaaaacacagg
gcucugcaaaaucguaagaugaaguauagggccugacaccugcccggugc
uggaagguuaagaggagauguuaucuucggagaagcauugaauugaagcc
ccaguaaacggcggccguaacuauaacgguccuaagguagcgaaauuccu
ugucggguaaguuccgaccugcacgaaugguguaacgaucuggacacugu
cucagccaugagcucggugaaauuguaguaacggugaagaugccguuuac
ccgcagugggacgaaaagacccugugcaccuuuacuauagcuuaguacug
accuuggauaaauguuuaucugaggccuaaccucgcugcgggggacagug
cuugguggguaguuugacugggguggucgccuccaaaagaguaacggagg
cuucuaaagguucccucaguacgcuugguaaccgugcguagagugcaaug
gcauaagggagcuugacugagagacauacaggucgaucagguacgaaagu
agagcauagugauccggugguuccgcauggaagggccaucgcucaaagga
uaaaagguacgccggggauaacaggcugaucucccccaagaguucauauc
gacggggggguuuggcaccucgaugucggcucgucacauccuggggcugg
agaaggucccaaggguugggcuguucgcccauuaaagugguacgcgagcu
ggguucagaacgucgugagacaguucggucucuaucuacugcgggcguua
gaaauuugaguggaucugauucuaguacgagaggaccgaauuggacuaac
cucuaguguaucuguugucccgccaggggcaccgcagaguagcuacguug
ggaagggauaagcgcugaaagcauauaagcgcgaaacccaccacaagaug
agauuucuuuuaaggaucguggaagaugaccacguugauaggcuauagau
guaaaggcaguaaugucauagucgaguaguacuaauaauccg
......<<<<<<<<<<.....<<<..<<<<<<<<<<<<<......<<<<<
<.....((.>>>.....<<<<<<<..<<<)).....>>>.....>>>>>>
>...>>>....<<<....>>><<<<<<<.....>>>>>>>.<<<<....>
>>>.>>...<<<<<<.....<<....>>......>>>>>.>.........
<<....>>...<<<<<.....<<.....>>....>>>>>...<<<....<
<<<<<<<.....>>>>>>>>.......<.<<......<<<...<<<<<..
....>>>>>((......<<<.....))>>>...>>>.......>>.....
.>........<<<<<<<...........>>>>>>>......<<<<<..<<
<<>>>>>..>>>......>>.>>>>>>>.>>...............<<..
..>>....>>.........<<<<.....>>>>.............>....
.>>>>>>>>>>.......<<<<..<<<<<.....>>>>>..>>>>...<.
<........>.>.<<<<<<....<<<<<<<<<<<<<..<<<...<<<.<.
..>>>>...>>>...<<....>>..<<<<.....>>>>......>>>>>>
>>>>>>>..<<.<...<<<.<<.....<<<<<<<<<..<<<....<<<<<
<......>>>>>>.....>>>...<<<...<<<........>>>..>>>.
...>>>>>>>>>...<<<.....>>>......>>.>>>......>.>>..
<<<<<<....<<<<<....>>>>><<<<<<<<......<<<<<<<<<...
..<<<....<<.<.<<<....<<<<.........>>.>>...>>>.>.>>
..>>.>.....>>>>>>>>>....>>>>>>.>>..<<<<<<<<<<.....
.>>>>>>>>>>....<<<......>>>...<<<<.<<<...<<<(((...
..<<<<<<.....<<......<<..<<<<<<<<<<.......<<<<<.<<
<..<<<<.......>>>>>>>.......<<......>>...>>>>>...>
>>>>>>>>>.>>..........)))>>...>>>>>>.>>>...>>>>>>>
<<<<<<<<..>>>>>>>>....>>>>>>..<<<<<<<.<.......<<<<
<<<<....>>>>>>>>....>.>>>>>>>........>>>>>><......
<<.....<<<<<<.......>>>>>><<<<....<<<<<.<<...<<<<<
<...<<.....>>.>>>>>>....((<<<<.<<...<<<...<<<....>
>>...>>>...>>...<<<<<........>>>>>))<<<<<<<<<<<<<.
..<<<<<...<<<<<.......<<<<.<<<<<<....[[....>>>>>>.
...<<<....<<<..<<.<<<<<<.<<.....>>>>>>>>.>>>>>....
>>>.......<<<...<<..>>...>>>.....>>>>......>>>>>..
......>>>>>...>>....>>>>>>>>>>>>>>>..>>.....<<....
..>>>>>>>.<<<<.....>>>>..>>>>..<<<<....<<<<<<<<.<<
.........<.....<<<<<....<<..>>.....>>>>><<<<<<<...
.>>>>>>>............<<<<<<<<<..<<<.........>>>..<<
<<<<<.....<<<....>>>.......>>>>>>>.<<<<<.<<<..<<<<
<<<..<<<<..<<...<<<<<<.<<....>>..>>>>>>...>>..>>>>
>>>>>..>>>>><<<<<<.......>>>>>>........<..........
.<<<<<<.....>>>>>>.....>....>>>>>..>>.>>>>>>>..>..
>>.>>>>>>>>.>>>>>>.....>.....<<<<<........>>>>>..<
<<<<<<<.<<<.<<......<<<<.<<<<<<..<<<<<.<<<.<<<<<.<
.<<<<<<<<<<<..>>>>>>>>>>>.>...<<<<<<.>>>>>>....>>>
>>.>>>..>>>>>..<<<<.....>>>><<<<<<...........>>>>>
>..<<...<<<<<<<...<<<<<.........>>>>>.....<<...(((
>>....>>>>>>>...<<<<..<<<......>>>..>>>>.<<<....>>
>.>>))).......<<<<<<<.<<..>>>>..>>>>>>>>>.........
....>>>>..>>>>>>.......<<<<.<.<<<<<<...<<.......>>
...>>>>>>...>>>>.>.......<<<<<.<.<<<<..<<<<<<<<<..
....>>>>>>..>>>.<<<<<.....>>>>>.....>>>>...>...>>>
.>>....<<<<<<<....>>>.>>>>....>>..>>>>>>>>>>>....<
<<<<<<...<<<<..<<<<<<<...............>>>>>>>.<<<<<
...<<<<...<<<<<<<<<<<.]].>>>>>>..>>>>>...>>>>.>>>>
>...<<<....<<<<<...........>>>>>....>>>.>>>>......
.>>>>>>>.....<<<<<<<<<.......>>>>>....<<<<<<<<.<<<
.....<<<<....>>>>...>>>..>>>>>.>>>...>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7jil Structural basis of sequestration of the anti-Shine-Dalgarno sequence in the Bacteroidetes ribosome.
Resolution2.8 Å
Binding residue
(original residue number in PDB)		M1 Q3 Q4 E5 S6 R7 I22 R23 T28 R30 R31 Y32 K66 K67 Y76
Binding residue
(residue number reindexed from 1)		M1 Q3 Q4 E5 S6 R7 I22 R23 T28 R30 R31 Y32 K66 K67 Y76
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
GO:0070180 large ribosomal subunit rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015934 large ribosomal subunit
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7jil, PDBe:7jil, PDBj:7jil
PDBsum7jil
PubMed33330920
UniProtA5FMZ0|RL14_FLAJ1 Large ribosomal subunit protein uL14 (Gene Name=rplN)

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