Structure of PDB 6swe Chain K Binding Site BS01

Receptor Information
>6swe Chain K (length=134) Species: 272844 (Pyrococcus abyssi GE5) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RIIQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLIL
AGEEIWNSVDIDVKVQGGGFMGQAEAARIAIARALVEWTGDMNLKEKFIK
YDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSYR
Ligand information
>6swe Chain 2 (length=468) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
guaaggcgggggagcacuacaagggguggagcgugcgguuuaauuggauu
caacgccgggaaccucaccgggggcgacggcaggaugaaggccaggcuga
aggucuugccggacgcgccgagaggaggugcauggccgccgucagcucgg
cguccacuuaagugugguaacgagcgagacccgcgcccccaguugccagu
cccucccgcucgggagggaggcacucuggggggacugccggcgauaagcc
ggaggaaggggcgggcgacgguaggucaguaugccccgaaacccccgggc
uacacgcgcgcuacaaugggcgggacaaugggugccgaccccgaaagggg
gagguaauccccuaaacccgcccucaguucggaucgcgggcugcaacucg
cccgcgugaagcuggaaucccuaguacccgcgcgucaucaucgcgcggcg
aauacgucccugcuccuu
.........<<<<<<<..<<.<<<<<<..<<<<<<<<<<......<<...
.....>>..........<<<<<<<...<<<<........<<<.<<<....
...>>>.>>>......>>>>...<<.<<<..<<<<<<<<.....<<<<..
...<<<<......>>>>....>>>>....<<<<<.<<<<<<<..<<...<
<<<<<<<....>>>>>>>>.>>...>>>>>>>.....<<<<<.....>>>
>>........>>>>>.....>>.>>>...>>>>>>>>....>>>>>>>..
.>>.>>>>>>>>.....<<<<<<<.....<<<..<<..<<<<....>>>>
..>>....>>>.....>>>>>>>......<....<<<<<<<........>
>>>>>>....>.....>>>>>>.....<<<<<<<.......>>>>>>>..
.....>>...>>>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6swe Cryo-EM study of an archaeal 30S initiation complex gives insights into evolution of translation initiation.
Resolution3.1 Å
Binding residue
(original residue number in PDB)		R10 K11 T12 R16 R20 G69 G70 M72 Q74 R104 R112 R113 T114 E115 H117 K118 P119 R121 S122 K124 G125 P126 R127 K129 R130 Q131 K132 S133
Binding residue
(residue number reindexed from 1)		R9 K10 T11 R15 R19 G68 G69 M71 Q73 R103 R111 R112 T113 E114 H116 K117 P118 R120 S121 K123 G124 P125 R126 K128 R129 Q130 K131 S132
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6swe, PDBe:6swe, PDBj:6swe
PDBsum6swe
PubMed32029867
UniProtQ9V195|RS9_PYRAB Small ribosomal subunit protein uS9 (Gene Name=rps9)

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