Structure of PDB 5lux Chain K Binding Site BS01
Receptor Information
>5lux Chain K (length=63) Species:
9606
(Homo sapiens) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
TKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWF
QNRRAKERKVNKK
Ligand information
>5lux Chain A (length=17) [
Search DNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
ttgtgttttacgacctc
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
5lux
Impact of cytosine methylation on DNA binding specificities of human transcription factors.
Resolution
3.23 Å
Binding residue
(original residue number in PDB)
T153 K154 D155 R158 V159 Y161 R166 R196 I200 N204
Binding residue
(residue number reindexed from 1)
T1 K2 D3 R6 V7 Y9 R14 R44 I48 N52
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0000981
DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677
DNA binding
Biological Process
GO:0006355
regulation of DNA-templated transcription
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:5lux
,
PDBe:5lux
,
PDBj:5lux
PDBsum
5lux
PubMed
28473536
UniProt
P47902
|CDX1_HUMAN Homeobox protein CDX-1 (Gene Name=CDX1)
[
Back to BioLiP
]