Structure of PDB 3jd5 Chain K Binding Site BS01

Receptor Information
>3jd5 Chain K (length=136) Species: 9913 (Bos taurus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SFSIYPPIPGQESSLRWAGKKFEEIPIAHIKASYNNTQIHVVSAAHQPLA
RASCGTEGFRNAKKGTGIAAQTAGIAAAAKATGKGVTHVRVVVKGLGPGR
LSAIKGLTMGGLEVISITDNTPIPHNGCRPRKARRL
Ligand information
>3jd5 Chain A (length=952) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
agguuuggucccagccuuccuguuaacucuuaauaaacuuacacaugcaa
gcaucuacaccccagugagaaugcccucuagguuauuaaaacuaagagga
gcuggcaucaagcacacacccuguagcucacgacgccuugcuuaaccaca
ccccacgggaaacagcagugacaaaaauuaagccauaaacgaaaguuuga
cuaaguuauauuaauuaggguugguaaaucucgugccagccaccgcgguc
auacgauuaacccaagcuaacaggaguacggcguaaaacguguuaaagca
ccauaccaaauaggguuaaauucuaacuaagcuguaaaaagccaugauua
aaauaaaaauaaaugacgaaagugacccuacaauagccgacgcacuauag
cuaagacccaaacugggauuagauaccccacuaugcuuagcccuaaacac
agauaauuacauaaacaaaauuauucgccagaguacuacuagcaacagcu
uaaaacucaaaggacuuggcggugcuuuauauccuucuagaggagccugu
ucuauaaucgauaaaccccgauaaaccucaccaauucuugcuaauacagu
cuauauaccgccaucuucagcaaacccuaaaaaggaaaaaaaguaagcgu
aauuaugauacauaaaaacguuaggucaagguguaaccuaugaaauggga
agaaaugggcuacauucucuacaccaagagaaucaagcacgaaaguuauu
augaaaccaauaaccaaaggaggauuuagcaguaaacuaagaauagagug
cuuaguugaauuaggccaugaagcacgcacacaccgcccgucacccuccu
caaauagauucagugcaucuaacccuauuuaaacgcacuagcuacaugag
aggagacaagucguaacaagguaagcauacuggaaagugugcuuggauaa
au
<<<.<..{..[[.>.>>><<<<<<<.<..<<<<<<<.....<<<.<<<..
..............<<......<<<<<<..<<<.......>>>..>>>>.
>>.<<<....<<<..<<.....>>.>>>......>>>..........>>.
..............>>>>>>..........<<.....<<......>>...
>>....>.>>>>>>....<<<<<<<.....(((.....((.>>>))....
...)))..>>>.>..>.>>>>>>>.....<<<((.....<<<.<...<..
..........<<<<<<........<<.<..<<<......>>>...>.>>.
................<....>..>>>>>>......>....>>>>..<<<
<<<<<....<...<<<<.........>>>>...>.>>>>>>..>>.....
.<<<<<<.......))...>>>>>>.>>>.<<<.......<<<....>>>
.....>>>...]]..}<<<<<.<<<<<<<....<..<<<<<...<<<<<<
<<<.....<<........>>..........<<<.<<<...........<<
.<<<..<<<<<<.......<<..<<<<<....>>>.......>>..>>..
...<<.......>.>........>>>...>>>>>>>>....>>>.>>>..
>>.>>>>>>>......<<<<......>>>>..............<<<<<<
........>>>>>>..........>>>>>.....<<<<<<<.........
>>>>>>>......>....>>>>>>>>>>.>>....<..<<.<...<<<<<
<....<.....<<<<<....<........>....>>>>>...>......>
>>>>>....>.>>...>......<<<<<<<<....>>>>>>>>.......
..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3jd5 Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome.
Resolution7.0 Å
Binding residue
(original residue number in PDB)		H90 N96 N97 Q99 H101 V103 H107 R112 G116 T117 R121 N122 A123 K125 K155 P183 I184 P185 H186 N187 G188 C189 R190 P191 R192 R195
Binding residue
(residue number reindexed from 1)		H29 N35 N36 Q38 H40 V42 H46 R51 G55 T56 R60 N61 A62 K64 K94 P122 I123 P124 H125 N126 G127 C128 R129 P130 R131 R134
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
GO:0032543 mitochondrial translation
GO:0043043 peptide biosynthetic process
Cellular Component
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005763 mitochondrial small ribosomal subunit
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3jd5, PDBe:3jd5, PDBj:3jd5
PDBsum3jd5
PubMed24799711
UniProtP82911|RT11_BOVIN Small ribosomal subunit protein uS11m (Gene Name=MRPS11)

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