Structure of PDB 3iy8 Chain K Binding Site BS01

Receptor Information
>3iy8 Chain K (length=117) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFA
AQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITD
VTPIPHNGCRPPKKRRV
Ligand information
>3iy8 Chain A (length=540) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
auuauacguagucaauuguuauuauucauauuaauuuuuuuaaaaguuuu
uuaauuuuauauuaguuuauuuguuuacaaauuuaaauuauauuucauua
uuuaggaauaguuaauuagauuuauuuguuaaugcuauuaaaggggugug
gaaaaaguguuaaauuauuuauauauuuaaauaauaaauaaaauauaacu
uauuagucagaaauggaugcgagccguugcgguaauuucuaugcuuuuaa
auauuauacauuuauuuuauuauauaugcaaauaaaaaaugacacauuaa
uuauuaauuauauuauauuauauuuauucacauaagucaacaauaucuau
uuacuguuuuugacaacaugauaaggauuauaaauggaauuauaauuuua
uaaucaaaacuaauuuauuauauuaaauuagcauguuuagauaaaacaau
aaauuuagaagguauucuugcccaccauucuuuguaauaaagacaacgug
caguaauuaauauauuuauaaaaauauauuuucucauguu
....<<<<....[..{>>.>>.<<<...<<..<.<<..<<......<(<<
<.[<(..[.<..<<...>>...>..........>)]..<.<.<......(
.<.<<..<>..>>{>...>>.<[.).....)>.].<(<.......>.>).
>>>>>...........<<.]..<<<(.....>>)>..>>..>>.<>>>..
...<<<<.....{..((........>>.].......)).}.>>.>..>>>
.>>........}...<<<<........<<<......<.<<<....<<...
...(....(<>>>.....>>>.>.<......<[.[.>....>........
....>>>...>>>.>.....<[)<...>......>]..)........].]
.....}...................<<.....<<.<..(>....>....<
>....>......)....>>.........<.<(..<<.<.<........>>
...>>>..)>.(...<<<..<<<<)...>>>>.>.>.>..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3iy8 Structure of a mitochondrial ribosome with minimal RNA
Resolution14.1 Å
Binding residue
(original residue number in PDB)		N17 R116 V117
Binding residue
(residue number reindexed from 1)		N17 R116 V117
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
GO:0019843 rRNA binding
GO:0070181 small ribosomal subunit rRNA binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3iy8, PDBe:3iy8, PDBj:3iy8
PDBsum3iy8
PubMed19497863
UniProtP0A7R9|RS11_ECOLI Small ribosomal subunit protein uS11 (Gene Name=rpsK)

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