Structure of PDB 2uxd Chain K Binding Site BS01

Receptor Information
>2uxd Chain K (length=119) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYA
AQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVD
DTPVPHNGCRPKKKFRKAS
Ligand information
>2uxd Chain A (length=1484) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uggagaguuugauccuggcucagggugaacgcuggcggcgugccuaagac
augcaagucgugcgggccgggguuuuacuccgggucagcggcggacgggu
gaguaacgcguggguaccuacccggaagagggggacaacccggggaaacu
cgggcuaaucccccauguggacccgcguccaaagggcuuugcccgcuucc
ggaugggcccgcgucccaucagcuaguuggugggguaauggcccaccaag
gcgacgacggguagccggucugagaggauggccggccacaggggcacuga
gacacgggccccacuccuacgggaggcagcaguuaggaaucuuccgcaau
gggcgcaagccugacggagcgacgccgcuuggaggaagaagcccuucggg
guguaaacuccugacccgggacgaaacccccacggggcugacgguaccgg
gguauagcgccggccaacuccgugccagcagccgcgguaauacggagggc
gcgagcguuacccggauucacugggcguaaagggcguguaggcggccugg
ggcgucccaugugaaagaccacggcucaaccgugggggagcgugggauac
gcucaggcuagacggugggagagggugguggaauucccggaguagcggug
aaaugcgcagauaccgggaggaacgccgauggcgaaggcagccaccuggu
ccacccgugacgcugaggcgcgaaagcguggggagcaaaccggauuagau
acccggguaguccacgcccuaaacgaugcgcgcuaggucucugggucucc
ugggggccgaagcuaacgcguuaagcgcgccgccuggggaguacggccgc
aaggcugaaacucaaaggaauugacgggggcccgcacaagcgguggagca
ugugguuuaauucgaagcaacgcgaagaaccuuaccaggccuugacaugc
uagggaaacccgggugaaagccuggggugccccgcgaggggagcccuagc
acaggugcugcauggccgucgucagcucgugccgugagguguuggguuaa
gucccgcaacgagcgcaacccccgccguuaguugccagcgguucggccgg
gcacucuaacgggacugcccgcgaagcgggaggaaggaggggacgacguc
uggucagcauggcccuuacggccugggcgacacacgugcuacaaugccca
cuacaaagcgaugccacccggcaacggggagcuaaucgcaaaaagguggg
cccaguucggauuggggucugcaacccgaccccaugaagccggaaucgcu
aguaaucgcggaucagccaugccgcggugaauacguucccgggccuugua
cacaccgcccgucacgccaugggagcgggcucuacccgaagucgccggga
gccaggcgccgaggguagggcccgugacuggggcgaagucguaacaaggu
agcuguaccggaaggugcggcuggaucacuuucu
....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<..<..<<<
.<<<..<<<..<<.<<<<<<<.......>>>>>.>>.>>>>>......<<
.......<<<<<<<<.<<...<<<<<<<.<<<<<....<<<<<......>
>>>>.....>>>>>...<<<<<....>>>>>..<<<<...>>>>.>>>>>
>>..>>>>>>>>>><<<....<<<..<<<<<<<<.......>>>>>>>>>
>>......>>>..<<<<<<<<....>>>>...>>>>.>>.<<<<<.<...
......>>>>>>.<<<<<..>>>>>...>>>>>>>........<<<....
<<<<....>>>>..>>>..>>.>>>>>>..<<<<......<<<<....>>
>>.....>>>>...<<<<<........<<<....>>>.........>>>>
>.....<<<<<(((...<<<<<.....<<.)))>>.......>>>>>>>>
>>..>>>>>>>>>..........<<<((.....<<<<...<<<.<<<<<<
<.<<<<<<<<<<......<<<<<<.....>>>>>>....>>>>>>>>..>
>>>>>>>>...<<<<<<<<...<<<<<<<....<<<<<<<.<..<<<...
...>>>.....>.>>>>>>>...........<<....>>.>>>>>>>..>
>>>>.>>>...>>>...>>>>....<<<<<<...<<...<<<<.<.....
>.>>>>...>>>>>>>>..........<<<<<<..<<<<<<<<<<...>>
>>>>>>>>...<<..))>>.....>>>>>>.>>>.<<<......<<<<..
..>>>>....>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<
<<<<<<......<<........>>..........<<<<<<<......<<<
<<<<<...<<<<<<<....>>>>>>>...<<<<....>>>>..>>>>>>>
>.<<<.<<<..<<<<<<.......<<<<<<<<<....>>>..<<<<....
..>>>>..>>>>>>.....<<<<.<<<<<<<...<...<<<.....>>>.
>....>>>>>>>.....<<<<<...>>>>>........>>>>........
.>>>...>>>>>>>>>...>>>>>>>...>>.>>>>>>>>.....<<<<<
<<.....<<<..<<..<<<<....>>>>..>>....>>>.....>>>>>>
>...........<<<<<<<........>>>>>>>..........>>>>>>
....<<<<<<<..........>>>>>>>......>>...>>>>>>>>>>.
>>....<..<<.<.<<<<.<<<..<<<<<<<<<<<<<...<.<<<<....
....>>>>.>..>>>>>>>>>>>>>..>>>.>>>>..>.>>...>.....
<<<<<<<<<....>>>>>>>>>............
Receptor-Ligand Complex Structure
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PDB2uxd Structures of Trnas with an Expanded Anticodon Loop in the Decoding Center of the 30S Ribosomal Subunit.
Resolution3.2 Å
Binding residue
(original residue number in PDB)		R12 Y20 N26 N27 I29 T31 G37 P39 I40 W42 S44 G46 G52 S53 K55 R85 V114 P115 H116 N117 G118 C119 R120 K123 K124
Binding residue
(residue number reindexed from 1)		R2 Y10 N16 N17 I19 T21 G27 P29 I30 W32 S34 G36 G42 S43 K45 R75 V104 P105 H106 N107 G108 C109 R110 K113 K114
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:2uxd, PDBe:2uxd, PDBj:2uxd
PDBsum2uxd
PubMed17416634
UniProtP80376|RS11_THET8 Small ribosomal subunit protein uS11 (Gene Name=rpsK)

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