Structure of PDB 1qvf Chain K Binding Site BS01 |
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>1qvf Chain 0 (length=2754)
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uaugccagcugguggauugcucggcucaggcgcugaugaaggacgugcca agcugcgauaagccauggggagccgcacggaggcgaagaaccauggauuu ccgaaugagaaucucuaacaauugcuucgcgcaaugaggaaccccgagaa cugaaacaucucaguaucgggaggaacagaaaacgcaaugugaugucguu aguaaccgcgagugaacgcgauacagcccaaaccgaagcccucacgggca auguggugucagggcuaccucucaucagccgaccgucucgacgaagucuc uuggaacagagcgugauacagggugacaaccccguacucgagaccaguac gacgugcgguagugccagaguagcggggguuggauaucccucgcgaauaa cgcaggcaucgacugcgaaggcuaaacacaaccugagaccgauagugaac aaguagugugaacgaacgcugcaaaguacccucagaagggaggcgaaaua gagcaugaaaucaguuggcgaucgagcgacagggcauacaaggucccucg acgaaugaccgacgcgcgagcguccaguaagacucacgggaagccgaugu ucugucguacguuuugaaaaacgagccagggagugugucugcauggcaag ucuaaccggaguauccggggaggcacagggaaaccgacauggccgcaggg cuugcccgagggccgccgucuucaagggcggggagccauguggacacgac ccgaauccggacgaucuacgcauggacaagaugaagcgugccgaaaggca cguggaagucuguuagaguugguguccuacaauacccucucgugaucuau guguaggggugaaaggcccaucgaguccggcaacagcugguuccaaucga aacaugucgaagcaugaccuccgccgagguagucugugagguagagcgac cgauugguccugucaaacuccaaacuuacagacgccguuugacgcgggga uuccggugcgcgggguaagccuguguaccaggaggggaacaacccagaga uagguuaagguccccaaguguggauuaaguguaauccucugaaggugguc ucgagcccuagacagccgggaggugagcuuagaagcagcuacccucuaag aaaagcguaacagcuuaccggccgagguuugaggcgcccaaaaugaucgg gacucaaauccaccaccgagaccuguccguaccacucauacugguaaucg aguagauuggcgcucuaauuggauggaaguaggggugaaaacuccuaugg accgauuagugacgaaaauccuggccauaguagcagcgauagucggguga gaaccccgacggccuaauggauaaggguuccucagcacugcugaucagcu gaggguuagccgguccuaagucauaccgcaacucgacuaugacgaaaugg gaaacggguuaauauucccgugccacuaugcagugaaaguugacgcccug gggucgaucacgcugggcaucgcccagucgaaccguccaacuccguggaa gccguaauggcaggaagcggacgaacggcggcauagggaaacgugauuca accuggggcccaugaaaagacgagcauaguguccguaccgagaaccgaca cagguguccauggcggcgaaagccaaggccugucgggagcaaccaacguu agggaauucggcaaguuagucccguaccuucggaagaagggaugccugcu ccggaacggagcaggucgcagugacucggaagcucggacugucuaguaac aacauaggugaccgcaaauccgcaaggacucguacggucacugaauccug cccagugcagguaucugaacaccucguacaagaggacgaaggaccuguca acggcgggggucuuaagguagcguaguaccuugccgcaucaguagcggcu ugcaugaauggauuaaccagagcuucacugucccaacguugggcccggug aacuguacauuccagugcggagucuggagacacccagggggaagcgaaga cccuauggagcuuuacugcaggcugucgcugaggacucucacuccgggag gaggacaccgauagccgggcaguuugacuggggcgguacgcgcucgaaaa gauaucgagcgcgcccuauggcuaucucagccggggacccggcgaagagu gcaagagcaaaagauagcuugacaguguucuucccaacgaggaacgcuga cgcgaaagcguggucuagcgaaccaauuagccugcuugaugcgggcaauu gaugacagaaaagcuacccuagggauaacagagucgucacucgcaagagc acauaucgaccgaguggcuugcuaccucgaugucgguucccuccauccug cccgugcagaagcgggcaagggugagguuguucgccuauuaaaggagguc gugagcuggguuuagaccgucgugagacaggucggcugcuaucuacuggg uguguaggugucugacaagaacgaccguauaguacgagaggaacuacggu ugguggccacugguguaccgguuguucgagagagcacgugccggguagcc acgccacacgggguaagagcugaacgcaucuaagcucgaaacccacuugg aaaagagacaccgccgaggucccgcguacaagacgcggucgauagacucg gggugugcgcgucgagguaacgagacguuaagcccacgagcacuaacaga ccaa |
..<<<<<<<<<<<.....((..((<<<<<<.[<<......<<<<<<.((. .((.>>>.....<<<<<<...<<<))..)).>>>......>>>>>>...> >>....<<<...>>>.....<<<<<.....>>>>>.>>...<<<<<<... ..<......>......>>>>>.>.........<<.....>>...<<<<<. ....<<.....>>....>>>>>...<<<...<<<...<<<<....>>>>. ....>>>....<<<<<<<<......<..<.....<<<<<<<......<<< <......>>>>.((......<<<.....))>>>....>>>>>>>...... >..>...>>>>>>.>>......<<<<<<<........>>>>>>>...... <<<<<.<<<<<<>>>>>..>>>......]..>>>>>>.)).......... .....<<....>>....))..........<<<.....>>>.......... .........>>>>>>>>>>>.......<<<<<<<<<<....<.<<<<..< <.........<<<<<....>>>>>.........>>..>>>>...>.>>>> >>>>>>...<<<........>>>.<<<<<<...<<<<<<<<<<<<<<..< <<...<<<<<...>>>>>...>>>...<<....>>....<<<<<...<<< <..>>>>...>>>>><<<<<<....>>>>>>...>>>>>>>>>>>>>>.< <.<...<<<<<<.....<<<<<<<<<..<<<....<<<<<<<....>>>> >>>.....>>>....<<<..<<.<<........>>>>.>>>....>>>>> >>>>...<<<.....>>>......>>>>>>......>.>>..<<<<<<.. ..<<<<<....>>>>><.<<<<<<...<<<.<<<<<<<<<...<<<.... .<<..<<.>>..>>...>>.>...>>>>>>>>>>>>.......>>>>>>. .>..<<<<<<.<<<.....>>>.>>>>>>....<<<......>>>...<< <<<<<...<<<(((.....<<<<<<.....<<...........<<<.<<< <<<<<<<.......<<<<<.<<...<<<<.......>>>>...>>..... ..<<<<......>>>>.>>>>>...>>>>>>>>>>>>>..........)) )>>....>>>>>>.>>>...>>>>>>><<<<<<<.......>>>>>..>> ....>>>>>><...<<<<<<<<......<<<<<<<<....>>>>>>>>.. .>>>>>>>>....>.....>>>>>><<.....<........<<<<<<... ....>>>>>><<<<<...<<<<..<<...<<<<<<...<<.....>>.>> >>>>....((<<<<<<...<<<<<<.<<.....>>..>>>>>>.....>> >..<<<<<........>>>>>))<<<<<<<<.......<<<...<<<<<< <<...<<<<<<<<<<<<<.[[>>>>>>><...<<<<<....<<<<<.... <<<<...>>>>.....>>>>>.....>>>>>....>......>>>>>>.. .>>>>>>>>.........>>>..>>>>>>>>.>>>..>>.....<<.... ..>>.>>>>..<<<.......>>>.>>>>>...<<<<.....<<<<<<<< .<<.........<.....<<<<<...............>>>>><<<<<<< <<.....>>>>>>>>>............<<<<<<<<<..<<<........ .>>>..<<<<<<<.....<<<....>>>.......>>>>>>>.<<<<<.< <<..<<<<<<<..<<<.....<<<<......>>>>.....>>>>>>>>.. >>>>><<...>>........<...........<<<<<.......>>>>>. ....>....>>>>>..>>.>>>>>>>..>..>>.>>>>>>>>.>>>>.>. ...>>.((.<<<<<<......))>>>>>>.<<<<<<<..(((.[[..... .<<<<.[[<<<<..<<<<<.<<<<<<<<..<<....>>...<<<<....> >>>.....>>>>>>>>..>>>>>...<<<.....>>>..<<<<<<..... ......>>>>>>..<<...<<<<<<<...<<<<<<..>>>>>>.....<< ...(((>>....>>>>>>>...<<<<<<<<<.........>>>>>>>>>. <<<....>>>.>>))).......<<<<<.<<<<<.>>>>>>>>>>>>>>> >..........>>>>..]]>>>>.......<<<<.<.<<<<<<...<<.. .....>>...>>>>>>...>>>>.>.......<<<<<..<<<<<..<<<< <<<<<......>>>>>>>..>>..<<<<.....>>>>......>>>>>.. ....>>>.>>....<<<<<<<....>>>.>>>>....]]..))).>>>>> >>....<<<<<<...<<<<..<<<<<<<<...............>>>>>> >><<<<<...<<<<...<<<<<<<<<<]]..>>>>>...>>>>>...>>> >.>>>>>..<<<....<<<<<...........>>>>>....>>>.>>>>. ......>>>>>>.....<<<<<<<<<.......>>>>>....<<<.<<<< <<<<....<<<<<..........>>>>>...>>>>.>>>>..>>>...>> >>.. |
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PDB | 1qvf Structures of deacylated tRNA mimics bound to the E site of the large ribosomal subunit |
Resolution | 3.1 Å |
Binding residue (original residue number in PDB) | T1 K3 K4 K5 R6 R8 G9 R11 T12 H13 G14 G16 H18 K19 N20 R21 R22 G23 A24 G25 H26 R27 G28 G29 R30 G31 D32 R35 K37 H38 E39 F40 H41 L46 G47 K48 G50 F51 K52 R53 P54 K56 V57 D65 D70 E71 K107 L109 G110 A111 G112 Q113 R115 S126 |
Binding residue (residue number reindexed from 1) | T1 K3 K4 K5 R6 R8 G9 R11 T12 H13 G14 G16 H18 K19 N20 R21 R22 G23 A24 G25 H26 R27 G28 G29 R30 G31 D32 R35 K37 H38 E39 F40 H41 L46 G47 K48 G50 F51 K52 R53 P54 K56 V57 D65 D70 E71 K102 L104 G105 A106 G107 Q108 R110 S121 |
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Enzyme Commision number |
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