Structure of PDB 9cl9 Chain J Binding Site BS01

Receptor Information
>9cl9 Chain J (length=142) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDT
GDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERV
IEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI
Ligand information
>9cl9 Chain CA (length=1543) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gguuaagcgacuaagcguacacgguggaugcccuggcagucagaggcgau
gaaggacgugcuaaucugcgauaagcgucgguaaggugauaugaaccguu
auaaccggcgauuuccgaauggggaaacccaguguguuucgacacacuau
cauuaacugaauccauagguuaaugaggcgaaccgggggaacugaaacau
cuaaguaccccgaggaaaccgagauucccccaguagcggcgagcgaacgg
ggagcagcccagagccugaaucaguguguguguuaguggaagcgucugga
aaggcgcgcgauacagggugacagccccguacacaaaaaugcacaugcug
ugagcucgaugaguagggcgggacacgugguauccugucugaauaugggg
ggaccauccuccaaggcuaaauacuccugacugaccgauagugaaccagu
accgugagggaaaggcgaaaagaaccccggcgaggggagugaaaaagaac
cugaaaccguguacguacaagcagugggagcacgcuuaggcgugugacug
cguaccuuuuguauaaugggucagcgacuuauauucuguagcaagguuaa
ccgaauaggggagccgaagggaaaaguugcaggguauagacccgaaaccc
ggugaucuagccaugggcgacuuguggcuggucaaaccgggagauagcug
guucuccccgaaagcuauuuagguagcgccucgugaauucguuaucacgg
gagacacacggcggggcuaacguccgucgugaagagggaaacaacccaga
ccgccagcuaaggucccaaagucaugguuaagugggaaacgagcggaaga
uguaacggggcuaaaccaugcaccgaagcugcggcagcgacgcuuaugcg
uuguuggguaggggagcguucuguaagccugcgaaggugugcugugaggc
augcuggagguaucagaagugcgaaugcugacauaaguaacgauaaagcg
ggugaaaagcccgcucgccggaagaccaaggguuccuguccaacguuaau
cggggcagggugagucgaccccuaaggcgaggcguagucgaugggaaaca
gguuaauauuccuguacuugguguuacugguaacaucaaaucguacccca
aaccgacacgguggucagguagagaauaccaaggcgcuugagagaacucg
cgagacucagugaaauugaacucgcugugagaugcaguguacccgcggcu
ggcuguucgccaugaacgucgugagacaguucgccgugggcgcuggagaa
cugaggggggcugcuccuaguacgagaggaccggaguggacgcaucacug
guguucggguugucaugccaauggcacugcccgguagcuaaaugcggaag
agauaagugccacgaaacuugccccgagaugaguucucccugacccuuua
aggguccugaaggaacguugaagacgacgacguugauaggccgggugugu
aaguugagcuaaccgguacuaaugaaccgugaggcuuaaccuu
<<<<<.<<......<<<<<<<<<<<......<...<.<<....<<.....
.......<<.....((.>>......<<<<.....<<<)).....>>>...
......>>>>..........<........>.<<............>>...
..<<<<<<.........>>>>>>............<<<<...........
.......>>>>.................<<..................>>
.......<<....<........<.......<<<...<<.......<....
...>...(........<<......).>>...>>.....>>>.......>.
.....>..........<......................>......<<<.
.........>>>..>>.......>>.....>>..>..............<
.<.......>..>>..........<.<........>>.............
.....>>>>>>>>>>>..........<....................>..
.....<...........>.<<<<<<.....<<..<.<.........<...
............>..................>.>.>>...........<<
.........<<<.<<.<....>>>.>>>...........>>.........
......<<<.........<...>.......<<<<<<........>>>>>>
............<<<.......>>>..........<<........>>...
.<<<.<<<......<<..........((......................
.......>>.....))...........>>>>>>...<..<..........
.>..>......>>>...<.<<<.....<<........<<<<<<....>>>
>>>.....>>....>>>..>......>>>>>>................<<
<.........>>>................<<...<<<<<<..........
...>>>>>>......<<.....<....<........>.....>.......
<<.........>>......<<<<<<<<<>>>>>>>>>....>>..>>...
..................<<<.....>>>............<.....<<.
.>>...>...............<<.<..........>>>.....<<....
..................<<....>>.........>>............<
...........<<<<..<..............>.>>>>...<.<......
<.....<.....<<<......>>>.......>......>...>.>.....
.<....<<<.>>>.....>...............>......<<.<<<...
.>>>>>................................<<.<<<..<...
.........>..>>>...>>.............>.>>>>>>..
Receptor-Ligand Complex Structure
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PDB9cl9 50S ribosome assembly intermediates at low temperature reveal bound RluB
Resolution5.04 Å
Binding residue
(original residue number in PDB)		M1 K2 T3 G66 N67 G107
Binding residue
(residue number reindexed from 1)		M1 K2 T3 G66 N67 G107
Gene Ontology
Molecular Function
GO:0003729 mRNA binding
GO:0003735 structural constituent of ribosome
GO:0008270 zinc ion binding
GO:0048027 mRNA 5'-UTR binding
GO:0070180 large ribosomal subunit rRNA binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
GO:0017148 negative regulation of translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
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Cellular Component
External links
PDB RCSB:9cl9, PDBe:9cl9, PDBj:9cl9
PDBsum9cl9
PubMed
UniProtP0AA10|RL13_ECOLI Large ribosomal subunit protein uL13 (Gene Name=rplM)

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