Structure of PDB 8kd9 Chain J Binding Site BS01

Receptor Information
>8kd9 Chain J (length=186) Species: 224324 (Aquifex aeolicus VF5) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DVFVLDTSVFTNPEIYRTFDQRGAMETFIHLALNSRAEFYMPTSVYTEMR
KIMDVGELWAEFEMVVKIRSPRRFQLTVPADFLYEFIEELRYRINKGLRI
AEEHTREASGSEDVGKLIARLREKYREALRQGILDSKEDVDVLLLAYELD
GVLVSADEGLRTWADKIGIKLIDPKNFKNILESLVR
Ligand information
>8kd9 Chain N (length=73) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaggcgcguagcucaguagggagagcgccggcccgacacgccggaggucg
gggguucaaguccccccgcgccu
.<<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<
<<<<.......>>>>>>>>>>>>
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8kd9 Cryo-EM structure of Aquifex aeolicus minimal protein-only RNase P (HARP) in complex with pre-tRNAs
Resolution2.87 Å
Binding residue
(original residue number in PDB)		N13 E15 R123 E126 A159 E161
Binding residue
(residue number reindexed from 1)		N12 E14 R120 E123 A156 E158
External links
PDB RCSB:8kd9, PDBe:8kd9, PDBj:8kd9
PDBsum8kd9
PubMed
UniProtO67035|RFRNP_AQUAE RNA-free ribonuclease P (Gene Name=aq_880)

[Back to BioLiP]