Structure of PDB 7pis Chain J Binding Site BS01

Receptor Information
>7pis Chain J (length=114) Species: 272634 (Mycoplasmoides pneumoniae M129) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NVSSGIIHVSCSPNNTIVSASDPGGNVLCWASSGTMGFKGSRKKTPYSAG
IAADKVAKTVKEMGMATVKLFVKGTGRGKDTAIRSFANAGLSITEINEKT
PIPHNGCKPPKRPR
Ligand information
>7pis Chain 5 (length=1493) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucugagaguuugauccuggcucaggauuaacgcuggcggcaugccuaaua
caugcaagucgaucgaaaguaguaauacuuuagaggcgaacgggugagua
acacguauccaaucuaccuuauaaugggggauaacuaguugaaagacuag
cuaauaccgcauaagaacuuugguucgaaucaaaguugaaaggaccugca
aggguucguuauuugaugagggugcgccauaucagcuaguugguggggua
acggccuaccaaggcaaugacguguagcuaugcugagaaguagaauagcc
acaaugggacugagacacggcccauacuccuacgggaggcagcaguaggg
aauuuuucacaaugagcgaaagcuugauggagcaaugccgcgugaacgau
gaaggucuuuaagauuguaaaguucuuuuauuugggaagaaugacuuuag
cagguaauggcuagaguuugacuguaccauuuugaauaagugacgacuaa
cuaugugccagcagucgcgguaauacauaggucgcaagcguuauccggau
uuauugggcguaaagcaagcgcaggcggauugaaaagucugguguuaaag
gcagcugcuuaacaguuguaugcauuggaaacuauuaaucuagagugugg
uagggaguuuuggaauuucauguggagcggugaaaugcguagauauauga
aggaacaccaguggcgaaggcgaaaacuuaggccauuacugacgcuuagg
cuugaaaguguggggagcaaauaggauuagauacccuaguaguccacacc
guaaacgauagauacuagcugucggggcgauccccucgguagugaaguua
acacauuaaguaucucgccuggguaguacauucgcaagaaugaaacucaa
acggaauugacggggacccgcacaagugguggagcauguugcuuaauucg
acgguacacgaaaaaccuuaccuagacuugacauccuuggcaaaguuaug
gaaacauaaugccgagugacagguggugcaugguugucgucagcucgugu
cgugagauguuggguuaagucccgcaacgagcgcaacccuuaucguuagu
uacauugucuagcgagacugcuaaugcaaauuggaggaaggaagggauga
cgucaaaucaucaugccccuuaugucuagggcugcaaacgugcuacaaug
gccaauacaaacagucgccagcuuguaaaagugagcaaaucuguaaaguu
ggucucaguucggauugagggcugcaauucguccucaugaagucggaauc
acuaguaaucgcgaaucagcuaugucgcggugaauacguucucgggucuu
guacacaccgcccgucaaacuaugaaagcugguaauauuuaaaaacgugu
ugcuaaccauuaggaagcgcaugucaaggauagcaccggugauuggaguu
aagucguaacaagguaccccuacgagaacguggggguggauca
.....<<<<....(((.>.>>>.<<...<<<<<...<<<<.<......<<
<.<<<..<<<..<<.<<<<<<....>>>>>>.>>>>>......<<.....
...<<<.<<<..<<...<.......<.<<.....<<<<<......>>>>>
......>>.>.....<<<<<<<........>>>>>>>....<<<<<<...
.>>>>>>.......>..>>>>>.>>>.<<.....<<<....<<<<<<...
....>>>>>>..>>>.......>>..<<<<<<<<....>>>...>>>>>.
>>.<<<<<.<.........>>>>>>.<.<<....>>.>...>>>>>>...
......<<<....<<<<....>>>>..>>>...>..>>>>...<<<<...
.....<<.....>>.......>>>>.......<<<.......<<<<<<<<
<........>>>>>>>>>........>>>..........<<<<<(((...
<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>.>.>....
......<<<((.....<<<<...<<<.<<<<<<..<<<<<.<<<<.....
<<<<<<<.....>>>>>>>..>>>>.>>>..>>.>>>>>>....<<<<<<
....<<<<<<<....<<<<<<<<...<<<......>>>......>>>>>>
>>...........<<....>>.>>>>>>>...>>>>.>>....>>>...>
>>>....<<<<<<...<<...<<<<.........>>>>...>>>>>>>>.
.........<<<<<<..<<<<<<<<<<......>>>>>>>>>>...<<..
))>>.....>>>>>>.>>>.<<........<<<....>>>......>>..
..)))..<<<<..<<<<<<<.....<......<<<<<<<<<.......<<
........>>..........<<<<<<<......<...<.......<<<<<
....>>>>>....>...>....<.<<<..<<<<<<.......<<<<<<<<
<....>>>..<<<<......>>>>..>>>>>>.....<<<..<<<<<<<.
........>>>>>>>.....<<<<<....>>>>>.........>>>....
.....>>>...>>>>>>>.....>>>>>>>....>.>>>>>>>>.....<
<<<<<<.....<<<..<<..<<<<....>>>>..>>....>>>....>>>
>>>>...........<<<<<<<........>>>>>>>.............
.>.....<<<<<<<..........>>>>>>>...........>>>>>>>.
>>.>>....<..<<.<.<<<<...<..<<<<<<..<..<<....<<<<<.
<<<<..<<....>>.>>>>>>>>>...>>..>..>>>>>>..>...>>>>
..>.>>...>.....<<<<<<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7pis Visualizing translation dynamics at atomic detail inside a bacterial cell.
Resolution15.0 Å
Binding residue
(original residue number in PDB)		H15 S19 P20 N21 N22 I24 S26 G32 N33 V34 L35 W37 G41 T42 K46 G47 S48 K50 K51 K80 P108 I109 H111 N112 G113 C114 K115 P117 K118 R119 P120 R121
Binding residue
(residue number reindexed from 1)		H8 S12 P13 N14 N15 I17 S19 G25 N26 V27 L28 W30 G34 T35 K39 G40 S41 K43 K44 K73 P101 I102 H104 N105 G106 C107 K108 P110 K111 R112 P113 R114
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7pis, PDBe:7pis, PDBj:7pis
PDBsum7pis
PubMed36171285
UniProtQ50296|RS11_MYCPN Small ribosomal subunit protein uS11 (Gene Name=rpsK)

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