Structure of PDB 7p48 Chain J Binding Site BS01

Receptor Information
>7p48 Chain J (length=146) Species: 1280 (Staphylococcus aureus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKLHELKPAEGSRKERNRVGRGVATGNGKTSGRGHKGQKARSGGGVRPGF
EGGQLPLFRRLPKRGFTNINRKEYAIVNLDQLNKFEDGTEVTPALLVESG
VVKNEKSGIKILGNGSLDKKLTVKAHKFSASAAEAIDAKGGAHEVI
Ligand information
>7p48 Chain A (length=2661) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uuaaguuauuaagggcgcacgguggaugccuuggcacuagaagccgauga
aggacguuacuaacgacgauaugcuuuggggagcuguaaguaagcuuuga
uccagagauuuccgaauggggaaacccagcaugaguuaugucauguuauc
gauaugugaauacauagcauaucagaaggcacacccggagaacugaaaca
ucuuaguacccggaggaagagaaagaaaauucgauucccuuaguagcggc
gagcgaaaugggaagagcccaaaccaacaagcuugcuuguugggguugua
ggacaggaguuacaaaggacgacauuagacgaaucaucuggaaagaugaa
ucaaagaagguaauaauccuguagucgaaaauguugucucucuuccugag
uacgacggagcacgugaaauuccgucggaaucugggaggaccaucuccua
aggcuaaauacucucuagugaccgauagugaaccaguaccgugagggaaa
ggugaaaagcaccccggaaggggagugaaauagaaccugaaaccgugugc
uuacaaguagucagagcccguuaaugggugauggcgugccuuuuguagaa
ugaaccggcgaguuacgauuugaugcaagguuaagcaguaaauguggagc
cguagcgaaagcgagucugaauagggcguuuaguauuuggucguagaccc
gaaaccaggugaucuacccuuggucagguugaaguucagguaacacugaa
uggaggaccgaaccgacuuacguugaaaagugagcggaugaacugagggu
agcggagaaauuccaaucgaaccuggagauagcugguucucuccgaaaua
gcuuuagggcuagccucaagugaugauuauuggagguagagcacuguuug
gauucagacaaacuccgaaugccaauuaauuuaacuugggagucagaaca
ugggugauaagguccguguucgaaagggaaacagcccagaccaccagcua
aggccccaaaauauauguuaaguggaaaaggauguggcacugcgccgaaa
auguaccggggcuaaacauauuaccgaagcuguggauuguccggacaaug
guaggagagcguucuaagggcguugaagcaugaucguaaggacaugugga
gcgcuuagaagugagaaugccggugugaguagcgaaagacgggugagaau
cccguccaccgauugacuaagguuuccagaggaaggcucguccgcucugg
guuagucggguccuaagcugaggccgacaggcguaggcgauggauaacag
guugauauuccuguaccaccuauaucgauggggggacgcaguaggauagg
cgaagcgugcgauuggauugcacgucuaagcaguaaggcugaguauuagg
caaauccgguacucgggcugagcugugauggggagaucgagucguugauu
ucacacugccgagaaaagccucuagauauaggugcccguaccgcaaaccg
acacagguagucaagaugagaauucuaaggugagcgagcgaacucucguu
aaggaacucggcaaaaugaccccguaacuucgggagaaggggugcucuuu
aggguuaacgcccagaagagccgcagugaauaggcccaagcgacuguuua
ucaaaaacacaggucucugcuaaaccguaaggugauguauaggggcugac
gccugcccggugcuggaagguuaagaggagugguuagcgcgaagcuacga
aucgaagccccaguaaacggcggccguaacuauaacgguccuaagguagc
gaaauuccuugucggguaaguuccgacccgcacgaaaggcguaacgauuu
gggcacugucucaacgagagacucggugaaaucauaguaccugugaagau
gcagguuacccgcgacaggacggaaagaccccguggagcuuuacuguagc
cugauauugaaauucguggcuuucuaacccgcaccacuuaucgugguggg
agacagugucaggcgggcaguuugacuggggcggucgccuccuaaaaggu
aacggaggcgcucaaagguucccucagaaugguuggaaaucauucauaga
guguaaaggcauaagggagcuugacugcgagaccuacaagucgagcaggg
ucgaaagacggacuuagugauccggugguuccgcauggaagggccaucgc
ucaacggauaaaagcuaccccggggauaacaggcuuaucucccccaagag
uucacaucgacggggagguuuggcaccucgaugucggcucaucgcauccu
ggggcuguagucggucccaaggguugggcuguucgcccauuaaagcggua
cgcgagcuggguucagaacgucgugagacaguucggucccuauccgucgu
gggcguaggaaauuugagaggagcuguccuuaaccgggauggacauaccu
cugguguaccaguugucgugccaacggcauagcuggguagcuaugugugg
acgggauaagugcugaaagcaucuaagcaugaagccccccucaagaugag
auuucccaacuucgguuauaagaucccucaaagaugaugagguuaauagg
uucgagguggaagcauggugacauguggagcugacgaauacuaaucgauc
gaagacuuaau
<<<<<<......<<<<<<<<<<<....{[[..[[<<<<<<<[[<<.....
.<<<<<<.[...((.>>>.....<<<<<<<..<<<))...].>>>.....
>>>>>>>...>>>....<<<....>>><<<<<<<......>>>>>>>.<<
<<<<<<<.........>>>>>>>.>>.>>.....<<<<......<<....
>>.......>>>>...........<<....>>..<<<<<......<<...
..>>.....>>>>>..(((....<<<<<<<<....>>>>>>>>......<
<<<..<<<<.......<<<<<<<<<<.<<<...<<<<<......>>>>>(
(......<<<.....))>>>...>>>...>>>>>>>>>>>>>>>>>>...
..<<<<<<<<.........>>>>>>>>......<<<<<..<<<<>>>>>.
.)))......]].>>>>>>>.]]...............<<....>>....
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>>.......<<<<..<<<<......>>>>..>>>>...<.<........>
.>.<<<<<<....<<<<<<<.<<<<<..<<<...<<<.....>>>...>>
>...<<....>>..<<<<.....>>>>.....>>>>>.>>>>>>>..<<.
<...<<<<<<.....<<<<<<<<<..<<<....<<<<<<......>>>>>
>.....>>>...<<<.<<<<<........>>>>>>>>....>>>>>>>>>
...<<<.....>>>......>>>>>>......>.>>..<<<<<<....<<
<<<....>>>>><<<<<<<<<...<<<<<<<<<.....<<<...<<<<<<
<..>>>>>>>..>>.>.....>>>>>.>>>>..>>>>>>>.>>..<<<<<
<<<<<......>>>>>>>>>>....<<<......>>>...<<<<.<<<..
.<<.(((.....<<<<<<...........<<..<<<<..>>>>.>>....
.......))).....>>>>>>..>>...>>>>>>><<<<<<..>>>>>>.
...>>>>>><.<<<<<<<.<<......<<<<<.<<....>>.>>>>>...
>>.>>>>>>>..>.....>>>>>><......<<....<<<<<<.......
>>>>>><<<<....<<<<<.<<...<<<<<<...<<.....>>.>>>>>>
....((<<<<.<<.<.<<<...<<<....>>>...>>>..>>>...<<<<
<........>>>>>))<<<<<<.<<<...<<<<....<<<<..<<<..<<
<<<.<<<<<<...(((...>>>>>><<..<<<<<..<<<.<<<<<<..<<
.....>>.>>>>>>..>>>..>>>>>...>>...<..>...>>>>>...>
>>...>>>>.........>>>>..>>>.>>>>>>>>>>..>>.....<<.
.....>>>>>>>.<<<.......>>>..>>>>..<<<<....<<<<<<<<
.<<...............<<<<<...............>>>>><<<<<<<
.<<<<....>>>>.>>>>>>>............<<<<<<<<<..<<<...
......>>>..<<<<<<<.....<<<....>>>.......>>>>>>>.<<
<<<.<<<..<<<<<<<..<<<<..<<...<<<<<<.<..>..>>>>>>..
.>>..>>>>>>>>>..>>>>><<<<<<.......>>>>>>........<.
..........<<<<<<.....>>>>>>.....>....>>>>>..>>.>>>
>>>>.....>>.>>>>>>>>.>>>>>>.....>.....<<<<<.......
.>>>>>..<<<<<<<<.(((.[[......<<<<.[[<<<<..<<<<<.<<
<<<<<<<.<<<<.<<..>>.>>>>....<<.<<<<<<.....>>>>>>>>
.....>>>>>>>>>..>>>>>..<<<<.....>>>><<<<<<........
...>>>>>>..<<...<<<<<<<...<<<<<<.......>>>>>>.....
<<.[.(((>>....>>>>>>>...<<<<..<<<......>>>..>>>>.<
<<....>>>.>>)))]......<<<<<<<.((..>>>>..))>>>>>>>.
............>>>>..]]>>>>.......<<<<...<<<<<<...<<.
......>>...>>>>>>....>>>.>.......<<<<<.<<<<<<..<<<
<<<<<<......>>>>>>>..>>.<<<<<.....>>>>>.....>>>>>.
.>...>>>.>>....<<<<<<<....>>>.>>>>....]]..)))>>>>>
>>>....<<<<<<<...<<<<..<<<<<<<.....>>>>>>>.<<<<<..
.<<<<...<<<<<<<<<<<.)))>>>>>>..>>>>>...>>>>.>>>>>.
..<<<.<..<<<<<...........>>>>>...>>>>.>>>>.......>
>>>>>>.<<<....>>>....<<<<<<<<<.......>>>>>....<<<<
<<<<.<<<....<<<<<....>>>>>...>>>..>>>>>.>>>...>>>>
....>>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7p48 Sal-type ABC-F proteins: intrinsic and common mediators of pleuromutilin resistance by target protection in staphylococci.
Resolution2.9 Å
Binding residue
(original residue number in PDB)
L3 H4 K7 G11 S12 R13 K14 R16 R18 G20 R21 A24 T25 G28 K29 T30 S31 G32 R33 K36 G37 Q38 K39 R41 S42 G43 R47 F50 G52 G53 Q54 L55 F58 R59 R60 P62 K63 R64 G65 F66 T67 N68 N70 R71 I76 N78 K103 N104 K110 L112 G113 N114 A130
Binding residue
(residue number reindexed from 1)
L3 H4 K7 G11 S12 R13 K14 R16 R18 G20 R21 A24 T25 G28 K29 T30 S31 G32 R33 K36 G37 Q38 K39 R41 S42 G43 R47 F50 G52 G53 Q54 L55 F58 R59 R60 P62 K63 R64 G65 F66 T67 N68 N70 R71 I76 N78 K103 N104 K110 L112 G113 N114 A130
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015934 large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function

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Biological Process

View graph for
Cellular Component
External links
PDB RCSB:7p48, PDBe:7p48, PDBj:7p48
PDBsum7p48
PubMed35137182
UniProtA0A077UGA7

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