Structure of PDB 6qxl Chain J Binding Site BS01

Receptor Information
>6qxl Chain J (length=404) Species: 287 (Pseudomonas aeruginosa) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MSVRRTKIVATLGPASNSPEVLEQLILAGIDVARLNFSHGTPDEHRARAR
LVRELAAKHGRFVALLGDLQGPKIRIAHKGINRRGGGLTAPALTDKDKAD
IKLAADMDLDYVAVSFPRDAKDMEYARRLLTEAGGKAWLVAKIERAEAVA
DDDALDGLIRASDAVMVARGDLGVEIGDAELVGIQKKIILHARRNNKVVI
TATQMMESMIHSPMPTRAEVSDVANAVLDYTDAVMLSAESAAGEYPVEAV
KAMARVCQGAEKHPTSQKSSHRLGQTFDRCDESIALASMYTANHFPGIKA
IICLTESGFTPLIMSRIRSSVPIYAYSPHRETQARVAMFRGVETIPFDPA
ALPAEKVSQAAVDELLKRGVVTKGDWVILTKGDSYTAQGGTNTMKVLHVG
DLLV
Ligand information
Ligand IDG6P
InChIInChI=1S/C6H13O9P/c7-3-2(1-14-16(11,12)13)15-6(10)5(9)4(3)8/h2-10H,1H2,(H2,11,12,13)/t2-,3-,4+,5-,6+/m1/s1
InChIKeyNBSCHQHZLSJFNQ-DVKNGEFBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)OP(=O)(O)O
CACTVS 3.341O[CH]1O[CH](CO[P](O)(O)=O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341O[C@H]1O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H](O)[C@H]1O
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)OP(=O)(O)O
ACDLabs 10.04O=P(O)(O)OCC1OC(O)C(O)C(O)C1O
FormulaC6 H13 O9 P
Name6-O-phosphono-alpha-D-glucopyranose;
ALPHA-D-GLUCOSE-6-PHOSPHATE;
6-O-phosphono-alpha-D-glucose;
6-O-phosphono-D-glucose;
6-O-phosphono-glucose
ChEMBL
DrugBankDB02007
ZINCZINC000003875375
PDB chain6qxl Chain J Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6qxl Evolutionary plasticity in the allosteric regulator-binding site of pyruvate kinase isoform PykA fromPseudomonas aeruginosa.
Resolution2.43 Å
Binding residue
(original residue number in PDB)
L383 T384 E385 S386 T389 G461 S463 A466 Q467 G468
Binding residue
(residue number reindexed from 1)
L304 T305 E306 S307 T310 G382 S384 A387 Q388 G389
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) R34 R75 K221 T282
Catalytic site (residue number reindexed from 1) R34 R75 K142 T203
Enzyme Commision number 2.7.1.40: pyruvate kinase.
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0003824 catalytic activity
GO:0004743 pyruvate kinase activity
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0030955 potassium ion binding
GO:0046872 metal ion binding
Biological Process
GO:0006096 glycolytic process
GO:0016310 phosphorylation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:6qxl, PDBe:6qxl, PDBj:6qxl
PDBsum6qxl
PubMed31484721
UniProtQ9HW72

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