Structure of PDB 5z58 Chain J Binding Site BS01

Receptor Information
>5z58 Chain J (length=522) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DEEELNDYKLRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIY
ERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYK
YTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFELRYKEVDRARTI
YERFVLVHPDVKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHL
YVAFAKFEENQKEFERVRVIYKYALDRISKQELFKNYTIFEKKFGDRRGK
RRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVNVPPIQEKRHWK
RYIYWINYALYEELEAKDPEQASLELIPHKKAKMWILYAQFRALGTSIGK
CPKKLFKVYIELELQLREFDREKFLEFGPENCTSWIELETILGDIDRARL
AISQPRLDMPEVLWIDFEIEQEETERTRNYRRLLQRTQHVKVIFAFELSS
GKEGSLTKCRQINKTMRNCEEKEERLMLLESFEEEFGTASDKERVDKLME
KVKKRRKVQTDDGSDAGWEEYF
Ligand information
>5z58 Chain F (length=93) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaaga
uuagcauggccccugcgcaaggaugacacauucgugaagcguu
<<<<<.<<<..>>>>>>>>...............................
......<<...<<<.....>>>....>>...............
Receptor-Ligand Complex Structure
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PDB5z58 Structure of the human activated spliceosome in three conformational states.
Resolution4.9 Å
Binding residue
(original residue number in PDB)		R236 H347 S348 N351 R355
Binding residue
(residue number reindexed from 1)		R21 H132 S133 N136 R140
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005515 protein binding
Biological Process
GO:0000245 spliceosomal complex assembly
GO:0000398 mRNA splicing, via spliceosome
GO:0006396 RNA processing
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0000974 Prp19 complex
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005681 spliceosomal complex
GO:0016607 nuclear speck
GO:0071007 U2-type catalytic step 2 spliceosome
GO:0071013 catalytic step 2 spliceosome
GO:0071014 post-mRNA release spliceosomal complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5z58, PDBe:5z58, PDBj:5z58
PDBsum5z58
PubMed29360106
UniProtQ9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1 (Gene Name=CRNKL1)

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