Structure of PDB 5w7g Chain J Binding Site BS01

Receptor Information
>5w7g Chain J (length=126) Species: 235266 (Captovirus AFV1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RQDSKDRYQYKQYIYRSIGGIVPPEMAETVTANQTAQWEAGFTPYHKLRL
AIKEICKTDGIPNIKWGMYIAFGEKLLKSYLKMKAGSASSDMIAEYINNA
ISAFSSRTGISQETAQKIADFITSNY
Ligand information
>5w7g Chain q (length=252) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
at
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5w7g Model for a novel membrane envelope in a filamentous hyperthermophilic virus.
Resolution4.5 Å
Binding residue
(original residue number in PDB)		Q8 K11 D12 Y19 F48 H52 R55 K59 W72 K88
Binding residue
(residue number reindexed from 1)		Q2 K5 D6 Y13 F42 H46 R49 K53 W66 K82
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0019029 helical viral capsid
GO:0044423 virion component

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:5w7g, PDBe:5w7g, PDBj:5w7g
PDBsum5w7g
PubMed28639939
UniProtQ70LC7|CAPS2_AFV1Y Major capsid protein 2 (Gene Name=ORF132)

[Back to BioLiP]