Structure of PDB 5fvc Chain J Binding Site BS01

Receptor Information
>5fvc Chain J (length=364) Species: 162145 (human metapneumovirus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LQGIHLSDLSYKHAILKESQYTIKRDVGTTTAVTPSSLQQEITLLCGEIL
YAKHADYKYAAEIGIQYISTALGSERVQQILRNSGSEVQVVLTRTYSQML
DIHGVEKSWVEEIDKEARKTMATLLNIPQNQRPSAPDTPIILLCVGALIF
TKLASTIEVGLETTVRRANRVLSDALKRYPRMDIPKIARSFYDLFEQKVY
HRSLFIEYGKALGSSSTGSKAESLFVNIFMQAYGAGQTMLRWGVIARSSN
NIMLGHVSVQAELKQVTEVYDLVREMGPESGLLHLRQSPKAGLLSLANCP
NFASVVLGNASGLGIIGMYRGRVPNTELFSAAESYAKSLKESNKINFSSL
GLTDEEKEAAEHFL
Ligand information
>5fvc Chain K (length=70) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
cccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccc
..................................................
....................
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5fvc Nucleocapsid assembly in pneumoviruses is regulated by conformational switching of the N protein.
Resolution4.17 Å
Binding residue
(original residue number in PDB)		K171 S174 R185 R186 R189 L243 N246 Q250 G255 T257 W261 S314 M337 Y338 R339 G340
Binding residue
(residue number reindexed from 1)		K152 S155 R166 R167 R170 L224 N227 Q231 G236 T238 W242 S295 M318 Y319 R320 G321
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0019013 viral nucleocapsid
GO:0019029 helical viral capsid
GO:0030430 host cell cytoplasm
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:5fvc, PDBe:5fvc, PDBj:5fvc
PDBsum5fvc
PubMed26880565
UniProtQ91F57

[Back to BioLiP]