Structure of PDB 5d2l Chain J Binding Site BS01

Receptor Information

>5d2l Chain J (length=226) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

GVSQSPSNKVTEKGKDVELRCDPISGHTALYWYRQRLGQGLEFLIYFQGN
SAPDKSGLPSDRFSAERTSVSTLTIQRTQQEDSAVYLCASSQTQLWETQY
FGPGTRLLVLEDNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE
LSWWVNGKEVHSGVCTDPQPLKEQPNDSRYALSSRLRVSATFWQRNHFRC
QVQFYGLSENDEWAKPVTQIVSAEAW

Ligand information

>5d2l Chain Q (length=9) Species: 10358 (Cytomegalovirus) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

NLVPMVATV

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5d2l Structural Basis for Clonal Diversity of the Public T Cell Response to a Dominant Human Cytomegalovirus Epitope.
Resolution	3.511 Å
Binding residue (original residue number in PDB)	Q98 W100
Binding residue (residue number reindexed from 1)	Q94 W96

External links

PDB	RCSB:5d2l, PDBe:5d2l, PDBj:5d2l
PDBsum	5d2l
PubMed	26429912

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