Structure of PDB 4m17 Chain J Binding Site BS01

Receptor Information

>4m17 Chain J (length=140) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

GQVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAGFVKPFTEAQLLCTQAG
GQLASPRSAAENAALQQLVVAKNEAAFLSMTDSKTEGKFTYPTGESLVYS
NWAPGEPNDAGGSEDCVEIFTNGKWNDVACGEKRLVVCEF

Ligand information

InChI=1S/Ca/q+2

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Ca

Name

CALCIUM ION

PDB chain

4m17 Chain J Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	4m17 Molecular mechanisms of inhibition of influenza by surfactant protein d revealed by large-scale molecular dynamics simulation.
Resolution	2.096 Å
Binding residue (original residue number in PDB)	E321 N323 E329 N341 D342
Binding residue (residue number reindexed from 1)	E106 N108 E114 N126 D127
Annotation score	4

Enzymatic activity

Enzyme Commision number

External links

PDB	RCSB:4m17, PDBe:4m17, PDBj:4m17
PDBsum	4m17
PubMed	24224757
UniProt	P35247\|SFTPD_HUMAN Pulmonary surfactant-associated protein D (Gene Name=SFTPD)

[Back to BioLiP]