Structure of PDB 8s3b Chain I Binding Site BS01
Receptor Information
>8s3b Chain I (length=409) Species:
3702
(Arabidopsis thaliana) [
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ALVATNRNFQRASRILGLDSKLEKSLLIPYREIKVECTIPKDDGSLVSYV
GFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVVDIPYGGAK
GGIGCNPKDLSISELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAW
ILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGLGVVFATEALFAEYGK
SISDMTFAIQGFGNVGTWAAKAIFERGGKVVAVSDINGAISNPNGIDIAA
LLKHKAGNGSLKDFSGGDAMNPNDLLVHDCDVLIPCALGGVLNKENANDV
KAKFIIEAANHPTDPDADEILSKKGVIILPDVYANAGGVTVSYFEWVQNI
QGFMWDEEKVNQELKRYMTKAFNDIKANCKTHNCDLRMGAFTLGLNRVAR
ATLLRGWEA
Ligand information
Ligand ID
NAD
InChI
InChI=1S/C21H27N7O14P2/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(32)14(30)11(41-21)6-39-44(36,37)42-43(34,35)38-5-10-13(29)15(31)20(40-10)27-3-1-2-9(4-27)18(23)33/h1-4,7-8,10-11,13-16,20-21,29-32H,5-6H2,(H5-,22,23,24,25,33,34,35,36,37)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
InChIKey
BAWFJGJZGIEFAR-NNYOXOHSSA-N
SMILES
Software
SMILES
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[C@@H]2O[C@H](CO[P]([O-])(=O)O[P@](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O)O)C(=O)N
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)([O-])O[P@@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O)O)C(=O)N
Formula
C21 H27 N7 O14 P2
Name
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
ChEMBL
CHEMBL1234613
DrugBank
DB14128
ZINC
PDB chain
8s3b Chain I Residue 907 [
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Receptor-Ligand Complex Structure
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PDB
8s3b
Legume-type glutamate dehydrogenase: Structure, activity, and inhibition studies.
Resolution
2.3 Å
Binding residue
(original residue number in PDB)
T185 G213 F214 G215 N216 V217 D237 I238 C288 A289 N312 N337
Binding residue
(residue number reindexed from 1)
T183 G211 F212 G213 N214 V215 D235 I236 C286 A287 N310 N335
Annotation score
4
External links
PDB
RCSB:8s3b
,
PDBe:8s3b
,
PDBj:8s3b
PDBsum
8s3b
PubMed
39142482
UniProt
G7JYL4
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