Structure of PDB 8r6f Chain I Binding Site BS01

Receptor Information
>8r6f Chain I (length=186) Species: 4565 (Triticum aestivum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRG
GNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNSSNNELVRTQTLVKNA
IVQVDAAPFKQWYLTHYGVEIKSNNVQRKLEKRQQGRTLDSHIEEQFSGG
RLLACISSRPGQCGRADGYILEGKELEFYMRKLQKK
Ligand information
>8r6f Chain A (length=1177) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcaugugcaaguaugaaccaaugaacugugaaacugcgaauggcucau
uaaaucaguuauaguuuguuugaugguauacucggauaaccguaguaauu
cuagagcuaauacgugcaacaaaccccgacuucugggaggggcgcauuua
uuagaugaugauucaugauaacucgacggaucgcacggccgccggcgacg
caucauucaaauuucugcccuaucaacuuucgaugguaggauaggggccu
accaugguggugacgggugacggagaauuaggguucgauuccggagaggg
agccugagaaacggcuaccacauccaaggaaggcagcaggcgcgcaaauu
acccaauccugacacggggagguagugacaauaaauaacaauaccggggu
cugguaauuggaaugaguacaaucuaaaucccuuaacgaggauccauugg
agggcaagucuggugccagcagccgcgguaauuccagcuccaauagcgua
uauuuaaguuguugcaguuaaaaagcucguaguuggaccuugggccgcga
ccccguuacuuugaagaaauuagagugcucaaagcaagccaucgcucugg
auacauuagcaugggauaacaucauaggauuccgguccuagggaucggag
uaaugauuaauagggacagucgggggcauucguauuucauagucagaggu
gaaauucuuggauuuaugaaagacgaacaacugcgaaagcauuugccaag
gauguuuucauuaaucaagaacgaaaguugggggcucgaagacgaucaga
uaccguccuagucucaaccauaaacgaugccgaccagggaucggcggaug
uugcuuaggacuccgccggcaccuuaugagaaaucaaagucuuuggguuc
cggggggaguauggucgcaaggcugaaacuuaaaggaauugacggaagug
guggagcgauuuguccuuuguacacaccgcccgucgcuccuaccgauuga
augguccggugaaguguucggaucgcggcgacggccgacgucgcgagaag
uccauugaaccuuaucauuuagaggaaggagaagucguaacaagguuucc
guaggugaaccugcggaaggaucauug
...<<<<<.[.((((>>>>>.<<<.<<<<<<...<.<...<......<<<
.<<<..<<....<<....<<.........>>...>>.>>......<<...
.....<<<..<<..<<....<<<<<.......<<.....<..<<<.....
>>>..>......>>.........<<<<..<<...>>..>>>>.....<<<
<<<............>>>>>>.........<<<<..<<<.>>>.>>>>..
>>>>>...>>>>..>>>.<<<....<<<....<<<<<<<<.......>>>
>>>>>>>>......>>>...<<<.<<<<....>>>>....>>>.>>.<<.
<<<..........>>>.>>.<.<<....>>.>...>>>>>>.........
<<<....<<<.....>>>..>>>..>....>.>.....<<<<<<<<.<.>
.>>>>>.>>>......<<..<...........>..>>.........<<<<
<((......<<<<.....<<..))>>.......>>>>.>>>>>..>>>>>
>>>>..........<.<((.....<.<<...<<<.<.....<<<.<..>.
>>>.<<<<<<.<<.......<<...<.......>..<<<....>>>....
.>>......>>.>>..>>>>.........<<<<<<<<<<.>>>>>>>>>>
.......>....<<<<<<.<<...<<<<..<<..<<<<<<<<...<<<..
....>>>......>>>>>>>>..>>.......<<....>>...>>>>...
>>>>>.>>>...>>>...>>.>....<<<<<<<...<...<<<<.<....
.>.>>>>...>>>>>>>>..........<<<.<<.<<<..<<<<<<<<.<
<<.<<.>>>>>>>>>>>>>..>>>...<<..))>>...>>.....>>>.>
.>.<<<......<<<<....>>>>....>>>..)))).]<<<<<.<<<..
..<<<....>>>...>>>>>>.>>....<..<<.<.<<<<<.<<.....<
<<<<<..<<<..<<<<..<...<<<<<<...<<..>>...>>>>>>...>
..>>>>..>>>..>>>>>>....>>.>>>>>..>.>>...>.....<<<<
<<<<<....>>>>>>>>>.........
Receptor-Ligand Complex Structure
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PDB8r6f High-Resolution Structure and Internal Mobility of a Plant 40S Ribosomal Subunit.
Resolution2.34 Å
Binding residue
(original residue number in PDB)
G2 R5 H9 K10 R11 R12 A13 T14 G15 W21 R22 K23 K24 R25 K26 Y27 L29 G30 R31 Q32 P33 A34 K42 R45 R46 R48 V49 R50 G51 G52 N53 K55 R57 L59 N65 S67 T74 R75 K76 S86 S87 V98 K99 N100 S155 N156 N157 V158 R160 K161 R165 S189 S190 R191 G193 Q194 C195 R197
Binding residue
(residue number reindexed from 1)
G1 R4 H8 K9 R10 R11 A12 T13 G14 W20 R21 K22 K23 R24 K25 Y26 L28 G29 R30 Q31 P32 A33 K41 R44 R45 R47 V48 R49 G50 G51 N52 K54 R56 L58 N64 S66 T73 R74 K75 S85 S86 V97 K98 N99 S123 N124 N125 V126 R128 K129 R133 S157 S158 R159 G161 Q162 C163 R165
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function

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Biological Process

View graph for
Cellular Component
External links
PDB RCSB:8r6f, PDBe:8r6f, PDBj:8r6f
PDBsum8r6f
PubMed38139282
UniProtA0A1D5UKZ4

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