Structure of PDB 7pas Chain I Binding Site BS01

Receptor Information
>7pas Chain I (length=101) Species: 272634 (Mycoplasmoides pneumoniae M129) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VKYPELKIKLESYDSTLLDLTTKKIVEVVKGVDVKIKGPLPLPTKKEVIT
IIRSPHVDKASREQFEKNRHKRLMILVDVNQGAIDSLKRIKIPVGVTLRF
S
Ligand information
>7pas Chain 5 (length=1493) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucugagaguuugauccuggcucaggauuaacgcuggcggcaugccuaaua
caugcaagucgaucgaaaguaguaauacuuuagaggcgaacgggugagua
acacguauccaaucuaccuuauaaugggggauaacuaguugaaagacuag
cuaauaccgcauaagaacuuugguucgaaucaaaguugaaaggaccugca
aggguucguuauuugaugagggugcgccauaucagcuaguugguggggua
acggccuaccaaggcaaugacguguagcuaugcugagaaguagaauagcc
acaaugggacugagacacggcccauacuccuacgggaggcagcaguaggg
aauuuuucacaaugagcgaaagcuugauggagcaaugccgcgugaacgau
gaaggucuuuaagauuguaaaguucuuuuauuugggaagaaugacuuuag
cagguaauggcuagaguuugacuguaccauuuugaauaagugacgacuaa
cuaugugccagcagucgcgguaauacauaggucgcaagcguuauccggau
uuauugggcguaaagcaagcgcaggcggauugaaaagucugguguuaaag
gcagcugcuuaacaguuguaugcauuggaaacuauuaaucuagagugugg
uagggaguuuuggaauuucauguggagcggugaaaugcguagauauauga
aggaacaccaguggcgaaggcgaaaacuuaggccauuacugacgcuuagg
cuugaaaguguggggagcaaauaggauuagauacccuaguaguccacacc
guaaacgauagauacuagcugucggggcgauccccucgguagugaaguua
acacauuaaguaucucgccuggguaguacauucgcaagaaugaaacucaa
acggaauugacggggacccgcacaagugguggagcauguugcuuaauucg
acgguacacgaaaaaccuuaccuagacuugacauccuuggcaaaguuaug
gaaacauaaugccgagugacagguggugcaugguugucgucagcucgugu
cgugagauguuggguuaagucccgcaacgagcgcaacccuuaucguuagu
uacauugucuagcgagacugcuaaugcaaauuggaggaaggaagggauga
cgucaaaucaucaugccccuuaugucuagggcugcaaacgugcuacaaug
gccaauacaaacagucgccagcuuguaaaagugagcaaaucuguaaaguu
ggucucaguucggauugagggcugcaauucguccucaugaagucggaauc
acuaguaaucgcgaaucagcuaugucgcggugaauacguucucgggucuu
guacacaccgcccgucaaacuaugaaagcugguaauauuuaaaaacgugu
ugcuaaccauuaggaagcgcaugucaaggauagcaccggugauuggaguu
aagucguaacaagguaccccuacgagaacguggggguggauca
.....<<<<..[.(((..>>>>.<<<<.<<<<<..<<<<<<<<.<....<
.......<<<..<<.<<<<<<....>>>>>>.>>>>>......<<.....
...<<<<<<<..<<...<...<<<.<.<<.....<<<<<<....>>>>>>
......>>.>.....<<<<<<<<<....>>>>>>>>>....<<<<<<...
.>>>>>>.>>>...>..>>>>>>>>>.<<<....<<<..<<<<<<<<...
....>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.
>>.<<<<<............>>>>>.<<<<<..>>>>>.......>..>.
......<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<...
....<<<.....>>>......>>>>.......<<<........<<<<<<<
<........>>>>>>>>.........>>>..........<<<<<(((...
<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>....
......<<<((.....<<<<...<<<.<<<<<<..<<<<<<<<<<.....
<<<<<<<.....>>>>>>>..>>>>>>>>..>>.>>>>>>...<<<.<<<
<...<<<<<<<....<<<<<.<<<..<<........>>.....>>>.>>>
>>...........<<....>>.>>>>>>>..>>>>..>>>...>>>...>
>>>...<<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>.
.>.......<<<<<<..<<<<<<<<<<......>>>>>>>>>>...<<..
))>>.....>>>>>>.>>>.<<......<<<<<....>>>>>....>>..
..))).]<<<<<..<<<<<<.<<..<<<<...<<<<<.<<<<......<<
........>>..........<<<<<<<......<<<<<........<<<<
....>>>>.....>>>.>>.<<<.<<<..<<<<<<.<.....<<<<<<<<
<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<.<..
.........>.>>>>.....<<<<<....>>>>>........>>>>....
.>...>>>...>>>>>>>>>...>>>>>>>...>>.>>.>>>>>.....<
<<<<<<.....<<<..<<..<<<<....>>>>..>>....>>>....>>>
>>>>......<..<.<<<<<<..........>>>>>>>...>......>>
>>.....<<<<<<<..........>>>>>>>......>>...>>>>>>.>
>>.>>....<.<.<...<<<<.<<...<<<<<<.....<.....<<<<<<
.<<<..<<....>>.>>>>>>>>>...>......>>>>>>...>>.>>>>
....>>...>.....<<<<<<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7pas Visualizing translation dynamics at atomic detail inside a bacterial cell.
Resolution16.0 Å
Binding residue
(original residue number in PDB)		K13 K15 S21 K29 K43 G44 P45 L46 P47 L48 P49 T50 K51 K52 E53 T56 I58 R59 S60 P61 H62 V63 D64 K65 R68 H76 K77 L79
Binding residue
(residue number reindexed from 1)		K7 K9 S15 K23 K37 G38 P39 L40 P41 L42 P43 T44 K45 K46 E47 T50 I52 R53 S54 P55 H56 V57 D58 K59 R62 H70 K71 L73
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7pas, PDBe:7pas, PDBj:7pas
PDBsum7pas
PubMed36171285
UniProtP75581|RS10_MYCPN Small ribosomal subunit protein uS10 (Gene Name=rpsJ)

[Back to BioLiP]