Structure of PDB 7ooc Chain I Binding Site BS01

Receptor Information
>7ooc Chain I (length=101) Species: 272634 (Mycoplasmoides pneumoniae M129) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VKYPELKIKLESYDSTLLDLTTKKIVEVVKGVDVKIKGPLPLPTKKEVIT
IIRSPHVDKASREQFEKNRHKRLMILVDVNQGAIDSLKRIKIPVGVTLRF
S
Ligand information
>7ooc Chain 5 (length=1493) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucugagaguuugauccuggcucaggauuaacgcuggcggcaugccuaaua
caugcaagucgaucgaaaguaguaauacuuuagaggcgaacgggugagua
acacguauccaaucuaccuuauaaugggggauaacuaguugaaagacuag
cuaauaccgcauaagaacuuugguucgaaucaaaguugaaaggaccugca
aggguucguuauuugaugagggugcgccauaucagcuaguugguggggua
acggccuaccaaggcaaugacguguagcuaugcugagaaguagaauagcc
acaaugggacugagacacggcccauacuccuacgggaggcagcaguaggg
aauuuuucacaaugagcgaaagcuugauggagcaaugccgcgugaacgau
gaaggucuuuaagauuguaaaguucuuuuauuugggaagaaugacuuuag
cagguaauggcuagaguuugacuguaccauuuugaauaagugacgacuaa
cuaugugccagcagucgcgguaauacauaggucgcaagcguuauccggau
uuauugggcguaaagcaagcgcaggcggauugaaaagucugguguuaaag
gcagcugcuuaacaguuguaugcauuggaaacuauuaaucuagagugugg
uagggaguuuuggaauuucauguggagcggugaaaugcguagauauauga
aggaacaccaguggcgaaggcgaaaacuuaggccauuacugacgcuuagg
cuugaaaguguggggagcaaauaggauuagauacccuaguaguccacacc
guaaacgauagauacuagcugucggggcgauccccucgguagugaaguua
acacauuaaguaucucgccuggguaguacauucgcaagaaugaaacucaa
acggaauugacggggacccgcacaagugguggagcauguugcuuaauucg
acgguacacgaaaaaccuuaccuagacuugacauccuuggcaaaguuaug
gaaacauaaugccgagugacagguggugcaugguugucgucagcucgugu
cgugagauguuggguuaagucccgcaacgagcgcaacccuuaucguuagu
uacauugucuagcgagacugcuaaugcaaauuggaggaaggaagggauga
cgucaaaucaucaugccccuuaugucuagggcugcaaacgugcuacaaug
gccaauacaaacagucgccagcuuguaaaagugagcaaaucuguaaaguu
ggucucaguucggauugagggcugcaauucguccucaugaagucggaauc
acuaguaaucgcgaaucagcuaugucgcggugaauacguucucgggucuu
guacacaccgcccgucaaacuaugaaagcugguaauauuuaaaaacgugu
ugcuaaccauuaggaagcgcaugucaaggauagcaccggugauuggaguu
aagucguaacaagguaccccuacgagaacguggggguggauca
.....<<<<..[.(((..>>>>.<<<<.<<<<<..<<<<<<<<.....<<
<.<<<..<<<..<<.<<<<<<....>>>>>>.>>>>>......<<.....
...<<<<<<<..<<...<..<<<<<<.<<.....<<<<<<....>>>>>>
......>>.>.....<<<<<<<<<<..>>>>>>>>>>....<<<<<<...
.>>>>>>>>>>>..>..>>>>>>>>>.<<<....<<<..<<<<<<<<...
....>>>>>>>>>>>......>>>..<<<<<<<<....>>>...>>>>>.
>>.<<<<<.<.........>>>>>>.<<<<<..>>>>>...>>>>>>...
...<..<<<....<<<<....>>>>..>>>.>>>.>>>>>>..<<<<...
...<<<<<...>>>>>.....>>>>...<<..<<<.......<<<<<<<<
<........>>>>>>>.>>.......>>>...>>.....<<<<<(((...
<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>....
......<<<((.....<<<<...<<<.<<<<<<..<<<<<<<<<<.....
<<<<<<<.....>>>>>>>..>>>>>>>>..>>.>>>>>>...<<<<<<<
<...<<<<<<<....<<<<<<<<<..<<<......>>>.....>>>>>>>
>>...........<<....>>.>>>>>>>..>>>>>.>>>...>>>...>
>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>.
.........<<<<<<..<<<<<<<<<<......>>>>>>>>>>...<<..
))>>.....>>>>>>.>>>.<<<.....<<<<<....>>>>>...>>>..
..))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<......<<
........>>..........<<<<<<<......<<<<<<<....<<<<<<
....>>>>>>.>>>>>.>>.<<<.<<<..<<<<<<.......<<<<<<<<
<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<<.
........>>>>>>>.....<<<<<....>>>>>........>>>>....
.....>>>...>>>>>>>>>...>>>>>>>...>>.>>>>>>>>.....<
<<<<<<.....<<<..<<..<<<<....>>>>..>>....>>>....>>>
>>>>......<....<<<<<<<........>>>>>>>....>.....>>>
>>>....<<<<<<<..........>>>>>>>......>>...>>>>>>>>
>>.>>....<..<<.<.<<<<.<<<..<<<<<<..<<<<<....<<<<<.
<<<<..<<....>>.>>>>>>>>>...>>>>>..>>>>>>..>>>.>>>>
..>.>>...>.....<<<<<<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7ooc Visualizing translation dynamics at atomic detail inside a bacterial cell.
Resolution3.7 Å
Binding residue
(original residue number in PDB)		K15 G44 P45 L46 P47 L48 P49 T50 K51 K52 E53 R59 S60 P61 H62 V63 D64 K65 S67 R68 Q70 H76 R78 L79
Binding residue
(residue number reindexed from 1)		K9 G38 P39 L40 P41 L42 P43 T44 K45 K46 E47 R53 S54 P55 H56 V57 D58 K59 S61 R62 Q64 H70 R72 L73
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7ooc, PDBe:7ooc, PDBj:7ooc
PDBsum7ooc
PubMed36171285
UniProtP75581|RS10_MYCPN Small ribosomal subunit protein uS10 (Gene Name=rpsJ)

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