Structure of PDB 5k2m Chain I Binding Site BS01

Receptor Information
>5k2m Chain I (length=273) Species: 69014 (Thermococcus kodakarensis KOD1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MRIGITYTVLRREEMAIKERAGEFGEVVMLHEDDLLFPGNYDLDVVIIRN
VSHFKALYTARLFESEGIPTVNSSRLIFEAGDKLFATLRLAGKVPVPEWK
AALSEGGALRVPDSLGYPLVSKPVFGSWGRLLAKVNDRDSLEAVLEHRKW
MKNPLYGIHYFQEFVEKPGRDIRSYVIGGEFVGAIYRYSNHWITNTARGG
KAEPCSDPEVEELSVKAWEAFGEGALAIDIFESEKGLLVNEVNPNMEFKN
AARVTGADMAGKLVEYAVEVAKT
Ligand information
>5k2m Chain M (length=9) Species: 69014 (Thermococcus kodakarensis KOD1) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
LPEVEEDWG
Receptor-Ligand Complex Structure
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PDB5k2m Lysine Biosynthesis of Thermococcus kodakarensis with the Capacity to Function as an Ornithine Biosynthetic System.
Resolution2.18 Å
Binding residue
(original residue number in PDB)		V51 S52 H53 F54 F125 W128 R130 N153 Y156 N245
Binding residue
(residue number reindexed from 1)		V51 S52 H53 F54 F125 W128 R130 N153 Y156 N245
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0005524 ATP binding
GO:0043774 coenzyme F420-2 alpha-glutamyl ligase activity
GO:0046872 metal ion binding
Biological Process
GO:0009085 lysine biosynthetic process
GO:0036211 protein modification process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5k2m, PDBe:5k2m, PDBj:5k2m
PDBsum5k2m
PubMed27566549
UniProtQ5JFW0

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