Structure of PDB 4r2g Chain I Binding Site BS01
Receptor Information
>4r2g Chain I (length=210) Species:
9606
(Homo sapiens) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
YVSPLSVALGETARISCGRQALGSRAVQWYQHKPGQAPILLIYNNQDRPS
GIPERFSGTPDINFGTTATLTISGVEVGDEADYYCHMWDSRSGFSWSFGG
ATRLTVLSQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWK
ADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEG
STVEKTVAPT
Ligand information
Ligand ID
MAN
InChI
InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6+/m1/s1
InChIKey
WQZGKKKJIJFFOK-PQMKYFCFSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.341
OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341
OC[C@H]1O[C@H](O)[C@@H](O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 1.5.0
C([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)O)O)O)O)O
ACDLabs 10.04
OC1C(O)C(OC(O)C1O)CO
Formula
C6 H12 O6
Name
alpha-D-mannopyranose;
alpha-D-mannose;
D-mannose;
mannose
ChEMBL
CHEMBL365590
DrugBank
ZINC
ZINC000003860903
PDB chain
4r2g Chain V Residue 4 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
4r2g
Structural Evolution of Glycan Recognition by a Family of Potent HIV Antibodies.
Resolution
3.283 Å
Binding residue
(original residue number in PDB)
D66A I66B
Binding residue
(residue number reindexed from 1)
D61 I62
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003823
antigen binding
Biological Process
GO:0002250
adaptive immune response
GO:0016064
immunoglobulin mediated immune response
GO:0050853
B cell receptor signaling pathway
Cellular Component
GO:0005576
extracellular region
GO:0005615
extracellular space
GO:0005886
plasma membrane
GO:0019814
immunoglobulin complex
GO:0070062
extracellular exosome
GO:0071735
IgG immunoglobulin complex
GO:0071738
IgD immunoglobulin complex
GO:0071742
IgE immunoglobulin complex
GO:0071745
IgA immunoglobulin complex
GO:0071753
IgM immunoglobulin complex
GO:0072562
blood microparticle
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:4r2g
,
PDBe:4r2g
,
PDBj:4r2g
PDBsum
4r2g
PubMed
25259921
UniProt
P0DOY3
|IGLC3_HUMAN Immunoglobulin lambda constant 3 (Gene Name=IGLC3)
[
Back to BioLiP
]