Structure of PDB 4v8p Chain HU Binding Site BS01

Receptor Information

>4v8p Chain HU (length=203) Species: 5911 (Tetrahymena thermophila) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MKHNNQLPVAQLRKHQQFRIKTFFNQAAQKKARLHARRAQAAAVFPRPTE
KLQPVVRKQTQRYNKSTKLGRGFTLQELKAAGISAAFAQSIGIKVDHRRK
NRCQESLELNKKRLLAYVSKLVLFPRHQGKAKKGLVNDTADTSSAAQNAL
QTSVPLPSVSKREKAVSNIAELRKKKVYRIIRQEKTNQKWDGKRKAKAQA
AAE

Ligand information

>4v8p Chain G2 (length=154) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

agaaaauuuucaacgguggauaucuagguucccgugacgaugaagaacgc
agcgaaaugcgauacgcaaugcgaauugcagaaccgcgagucaucagauc
uuugaacgcaagugguggagguguaaaaaccuucauguuuguuucagugu
ggaa

............................................<<<<<<
.<<.....>>>.....(.<<<......>>............>>>..)...
>>>....<<.....>><<<<<<......>>>>>>................
....

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	4v8p Crystal Structure of the Eukaryotic 60S Ribosomal Subunit in Complex with Initiation Factor 6.
Resolution	3.52 Å
Binding residue (original residue number in PDB)	F24 N25 A28
Binding residue (residue number reindexed from 1)	F24 N25 A28

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:4v8p, PDBe:4v8p, PDBj:4v8p
PDBsum	4v8p
PubMed	22052974
UniProt	P0DJ58\|RL13_TETTS Large ribosomal subunit protein eL13 (Gene Name=RPL13)

[Back to BioLiP]