BioLiP

Receptor Information

>8ckb Chain H005 (length=660) Species: 2301731 (Bacteroides phage crAss001) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

NFPRQMLPFSKKTKQWRKDCLLWANQKTFFNYSLVRKSVIHKKINYDLLN
GRLHMSDLELVLIKAAYIPDRLQHYPIMNSKLNVLRGEESKRVFDFKVVV
TNPNAISEIEDNKKNELLQRLQEMITDTSISEDEYNIKLEKLNDYYTYEW
QDIREVRANELLNHYIKEYDIPLIFNNGFMDAMTCGEEIYQCDIVGGEPV
IERVNPLKIRIFKSGYSNKVEDADMIILEDYWSPGRVIDTYYDVLSPKDI
KYIETMPDYAGNLRVLRLYWKSKRKILKVKSYDPETGEEEWNFYPENYVV
NKEAGEEVQSFWVNEAWEGTMIGNEIFVNMRPRLIQYNRLNNPSRCHFGI
VGSIYNLNDSRPFSLVDMMKPYNYLYDAIHDRLNKAIASNWGSILELDLS
KVPKGWDVGKWMYYARVNHIAVIDSFKEGTIGASTGKLAGALNNAGKGMI
ETNIGNYIQQQINLLEFIKMEMADVAGISKQREGTLQSSHITEWLFTIHD
DVKKRALECFLETAKVALKGRNKKFQYILSDTSTRVMEIDGDEFAEADYG
LVVDNSNGTQELQQKLDTLAQAALQTQTLSFSTITKLYTSSSLAEKQRLI
EKDEKQIRERQAQAQKEQLEAQQQIAAMQQQQKEAELLQKEEANIRDNQT
KIIIAQIQSE

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

8ckb Chain H005 Residue 901 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	8ckb Structural atlas of the most abundant human gut virus
Resolution	4.39 Å
Binding residue (original residue number in PDB)	A114 E119 Q160
Binding residue (residue number reindexed from 1)	A105 E110 Q151
Annotation score	4

Enzyme Commision number

	Cellular Component
GO:0019028	viral capsid

PDB	RCSB:8ckb, PDBe:8ckb, PDBj:8ckb
PDBsum	8ckb
PubMed
UniProt	A0A385DT68\|PORTL_BPCA1 Portal protein (Gene Name=crAss001_20)

[Back to BioLiP]

Structure of PDB 8ckb Chain H005 Binding Site BS01