BioLiP

Receptor Information

>8ckb Chain H001 (length=688) Species: 2301731 (Bacteroides phage crAss001) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

NFPRQMLPFSKKTKQWRKDCLLWANQKNYSLVRKSVIHKKINYDLLNGRL
HMSDLELVLIKAAYIPDRLQHYPIMNSKLNVLRGEESKRVFDFKVVVTNP
NAISEIEDNKKNELLQRLQEMITDTSISEDEYNIKLEKLNDYYTYEWQDI
REVRANELLNHYIKEYDIPLIFNNGFMDAMTCGEEIYQCDIVGGEPVIER
VNPLKIRIFKSGYSNKVEDADMIILEDYWSPGRVIDTYYDVLSPKDIKYI
ETMPDYIGQGAVDQMDNIDERYGFVNQNMISLLPYDLAGNLRVLRLYWKS
KRKILKVKSYDPETGEEEWNFYPENYVVNKEAGEEVQSFWVNEAWEGTMI
GNEIFVNMRPRLIQYNRLNNPSRCHFGIVGSIYNLNDSRPFSLVDMMKPY
NYLYDAIHDRLNKAIASNWGSILELDLSKVPKGWDVGKWMYYARVNHIAV
IDSFKEGTIGASTGKLAGALNNAGKGMIETNIGNYIQQQINLLEFIKMEM
ADVAGISKQREGTLQSSHITEWLFTIHDDVKKRALECFLETAKVALKGRN
KKFQYILSDTSTRVMEIDGDEFAEADYGLVVDNSNGTQELQQKLDTLAQA
ALQTQTLSFSTITKLYTSSSLAEKQRLIEKDEKQIRERQAQAQKEQLEAQ
QQIAAMQQQQKEAELLQKEEANIRDNQTKIIIAQIQSE

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

8ckb Chain H001 Residue 901 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8ckb Structural atlas of the most abundant human gut virus
Resolution	4.39 Å
Binding residue (original residue number in PDB)	E119 Q160
Binding residue (residue number reindexed from 1)	E107 Q148
Annotation score	4

Enzyme Commision number

	Cellular Component
GO:0019028	viral capsid

PDB	RCSB:8ckb, PDBe:8ckb, PDBj:8ckb
PDBsum	8ckb
PubMed
UniProt	A0A385DT68\|PORTL_BPCA1 Portal protein (Gene Name=crAss001_20)

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Structure of PDB 8ckb Chain H001 Binding Site BS01