Structure of PDB 8qjr Chain H Binding Site BS01

Receptor Information
>8qjr Chain H (length=101) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NLTKKMKKIVDAVIKYKDSSRQLSEVFIQLPSRKELPEYYELIRKPVDFK
KIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFT
S
Ligand information
Ligand IDVLH
InChIInChI=1S/C57H69N11O8S/c1-33(2)53(57(72)67-31-41(69)24-48(67)56(71)61-34(3)36-9-11-37(12-10-36)54-35(4)60-32-77-54)50-28-52(64-76-50)73-22-21-65-19-16-42(17-20-65)74-43-25-44(26-43)75-51-23-38(15-18-59-51)68-39-13-14-40(68)30-66(29-39)47-27-46(62-63-55(47)58)45-7-5-6-8-49(45)70/h5-12,15,18,23,27-28,32-34,39-44,48,53,69-70H,13-14,16-17,19-22,24-26,29-31H2,1-4H3,(H2,58,63)(H,61,71)/t34-,39?,40?,41+,43-,44-,48+,53+/m0/s1
InChIKeyMOMWKZXTQZEWBK-QRYPXUBRSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CC(C)[C@@H](C(=O)N1C[C@H](O)C[C@H]1C(=O)N[C@@H](C)c2ccc(cc2)c3scnc3C)c4onc(OCCN5CC[C@H](CC5)O[C@@H]6C[C@H](C6)Oc7cc(ccn7)N8[C@@H]9CC[C@H]8CN(C9)c%10cc(nnc%10N)c%11ccccc%11O)c4
OpenEye OEToolkits 2.0.7Cc1c(scn1)c2ccc(cc2)[C@H](C)NC(=O)[C@@H]3C[C@H](CN3C(=O)[C@@H](c4cc(no4)OCCN5CCC(CC5)OC6CC(C6)Oc7cc(ccn7)N8[C@@H]9CC[C@H]8CN(C9)c1cc(nnc1N)c1ccccc1O)C(C)C)O
OpenEye OEToolkits 2.0.7Cc1c(scn1)c2ccc(cc2)C(C)NC(=O)C3CC(CN3C(=O)C(c4cc(no4)OCCN5CCC(CC5)OC6CC(C6)Oc7cc(ccn7)N8C9CCC8CN(C9)c1cc(nnc1N)c1ccccc1O)C(C)C)O
CACTVS 3.385CC(C)[CH](C(=O)N1C[CH](O)C[CH]1C(=O)N[CH](C)c2ccc(cc2)c3scnc3C)c4onc(OCCN5CC[CH](CC5)O[CH]6C[CH](C6)Oc7cc(ccn7)N8[CH]9CC[CH]8CN(C9)c%10cc(nnc%10N)c%11ccccc%11O)c4
FormulaC57 H69 N11 O8 S
Name(2S,4R)-1-[(2R)-2-[3-[2-[4-[3-[4-[(1R,5S)-3-[3-azanyl-6-(2-hydroxyphenyl)pyridazin-4-yl]-3,8-diazabicyclo[3.2.1]octan-8-yl]pyridin-2-yl]oxycyclobutyl]oxypiperidin-1-yl]ethoxy]-1,2-oxazol-5-yl]-3-methyl-butanoyl]-N-[(1S)-1-[4-(4-methyl-1,3-thiazol-5-yl)phenyl]ethyl]-4-oxidanyl-pyrrolidine-2-carboxamide
ChEMBL
DrugBank
ZINC
PDB chain8qjr Chain F Residue 303 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8qjr PROTACs Targeting BRM (SMARCA2) Afford Selective In Vivo Degradation over BRG1 (SMARCA4) and Are Active in BRG1 Mutant Xenograft Tumor Models.
Resolution3.17 Å
Binding residue
(original residue number in PDB)
V1484 F1485 L1488 P1489 E1493 Y1497 A1536 F1539 N1540 I1546
Binding residue
(residue number reindexed from 1)
V26 F27 L30 P31 E35 Y39 A78 F81 N82 I88
Annotation score1
Enzymatic activity
Enzyme Commision number 3.6.4.-
Gene Ontology
Biological Process
GO:0006338 chromatin remodeling
Cellular Component
GO:0016586 RSC-type complex

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:8qjr, PDBe:8qjr, PDBj:8qjr
PDBsum8qjr
PubMed38180485
UniProtP51532|SMCA4_HUMAN Transcription activator BRG1 (Gene Name=SMARCA4)

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