Structure of PDB 8q4f Chain H Binding Site BS01

Receptor Information
>8q4f Chain H (length=129) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKV
EGDTKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGI
AVVSTSKGVMTDRAARQAGLGGEIICYVA
Ligand information
>8q4f Chain A (length=1512) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aauugaagaguuugaucauggcucagauugaacgcuggcggcaggccuaa
cacaugcaagucgaacgguaacaggaagaagcuugcuucuuugcugacga
guggcggacgggugaguaaugucugggaaacugccugauggagggggaua
acuacuggaaacgguagcuaauaccgcauaacgucgcaagaccaaagagg
gggccucuugccaucggaugugcccagaugggauuagcuaguaggugggg
uaacggcucaccuaggcgacgaucccuagcuggucugagaggaugaccag
ccacacuggaacugagacacgguccagacuccuacgggaggcagcagugg
ggaauauugcacaaugggcgcaagccugaugcagccaugccgcguguaug
aagaaggccuucggguuguaaaguacuucagcggggaggaagggaguaaa
guuaauaccuuugcucauugacguuacccgcagaagaagcaccggcuaac
uccggccagcagcccgguaauacggagggugcaagcguuaaucggaauua
cugggcguaaagcgcacgcaggcgguuuguuaagucagaugugaaauccc
cgggcucaaccugggaacugcaucugauacuggcaagcuugagucucgua
gagggggguagaauuccagguguagcggugaaaugcguagagaucuggag
gaauaccgguggcgaaggcggcccccuggacgaagacugacgcucaggug
cgaaagcguggggagcaaacaggauuagauacccugguaguccacgccgu
aaacgaugucgacuuggagguugugccggcguggcuuccggagcuaacgc
guuaagucgaccgccuggggaguacggccgcaagguuaaaacucaaauga
auugacgggggcccgcacaagcgguggagcaugugguuuaauucgauaac
gcgaagaaccuuaccuggucuugacauccacggaaguuuucagagaugag
aaugugccuucgggaaccgugagacaggugcugcauggcugucgucagcu
cguguugugaaauguuggguuaagucccgcaacgagcgcaacccuuaucc
uuuguugccagcgguccggccgggaacucaaaggagacugccagugauaa
acuggaggaagguggggaugacgucaagucaucaugcccuuacgaccagg
gcacacacgugcuacaauggcgcauacaaagagaagcgaccucgcgagag
caagcggaccucauaaagugcgucguaguccggauuggagucugcaacuc
gacuccaugaagucggaaucgcuaguaaucguggaucagaaugccacggu
gaauacguucccgggccuuguacacaccgcccgucacaccaugggagugg
guugcaaaagaaguagguagcuuaaccuucgggagggcgcuuaccacuuu
gugauucaugacuggggugaagucguaacaagguaaccguaggggaaccu
gcgguuggauca
.......<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....
<<<.<<<..<<<..<<.<...<<<<<<............>>>.>>>.>..
>>>>>......<<.......<<<<<<<..<<...<<<<<<<.<.<<....
.<<<<<......>>>>>......>>.>.....<<<....>>.>...<<<<
<<.>>>>>>.>>>>>>>..>>.>>>>>>><<<....<<<..<<<<<<<..
.......>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>
>.>>.<<<<.<<.........>>>>>>.<<<<....>>>>...>>>>>>.
........<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<.
......<<.<...>>>......>>>>..<.<<..<......<.<<<<<<<
.........>>>>>>>.>........>..>>....>..<<<<<(((...<
<<<<.......)))........>>>>>>>>>>..>>>>>>>>>.......
...<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<<......<<
<<<<.....>>>>>>....>>>>>>>>..>>>>>>>>>...<<<<<<<<.
..<<<<<<<....<<<<<<<<...<<<......>>>......>>>>>>>.
>..........<<....>>.>>>>>>>..>>>>.>>>>...>>>...>>>
>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>...
.......<<<<<<.<<<<<<<<<<......>>>>>>>>>>..<<..))>>
.....>>>>>>.>>>.<<<......<<<<....>>>>....>>>..))))
.]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<......<<.....
.>>..........<<<<<<<......<<.<<<<.....<<<......>>>
......<<....>>..>>>>..>>..<.......<<<<<<.......<<<
<<<<<<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<
<<<<...<...<<.......>>.>....>>>>>>>.....<<<<<.....
>>>>>........>>>>.........>>>...>>>....>...>>>>>>>
..>>.>>>>>>>>.....<<<<.........<<..<<...<<<....>>>
...>>....>>.........>>>>......<....<<<<<<<........
>>>>>>>....>.....>>>>>>.....<<<<<<.........>>>>>>.
......>>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<<<
<<<<<<<<....<<<<<<.<<<<..<<....>>.>>>>>>>>>>...>>>
>>>>>>>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<....>>>
>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8q4f Structure of arbekacin bound Escherichia coli 70S ribosome
Resolution3.1 Å
Binding residue
(original residue number in PDB)
S2 Q4 P6 T12 R15 N16 S30 K31 K56 R80 P81 G82 Y86 R88 K89 S105 T106 S107 G122
Binding residue
(residue number reindexed from 1)
S1 Q3 P5 T11 R14 N15 S29 K30 K55 R79 P80 G81 Y85 R87 K88 S104 T105 S106 G121
External links
PDB RCSB:8q4f, PDBe:8q4f, PDBj:8q4f
PDBsum8q4f
PubMed
UniProtP0A7W7|RS8_ECOLI Small ribosomal subunit protein uS8 (Gene Name=rpsH)

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