Structure of PDB 8ebv Chain H Binding Site BS01

Receptor Information
>8ebv Chain H (length=504) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
IETPEQAKTRERSEKIKLEFETYLRRAMKRFNKGVHEDTHKVHLLCLLAN
GFYRNNICSQPDLHAIGLSIIPARFTRVLPRDVDTYYLSNLVKWFIGTFT
VNAELSASEQDNLQTTLERRFAIYSARDDEELVHIFLLILRALQLLTRLV
LSLQWLEVFCEQEEKWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDG
WVRDVTQRYDPVWMTVTRKCRVDAEWWAETLRPYQSPFMDREKKEDLEFQ
AKHMDQPLPTAIGLYKNHPLYALKRHLLKYEAIYPETAAILGYCRGEAVY
SRDCVHTLHSRDTWLKKARVVRLGEVPYKMVKGFSNRARKARLAEPQLRE
ENDLGLFGYWQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPIGCVQLNL
PNLHRVARKLDIDCVQAITGFDFHGGYSHPVTDGYIVCEEFKDVLLTAWE
NEQAVIERKEKEKKEKRALGNWKLLAKGLLIRERLKRRYGARILAASWPQ
NRED
Ligand information
>8ebv Chain L (length=53) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aggtagtcacagctgattgcgctgaggatcctagacgtgcgatatctatg
cca
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8ebv Lesion recognition by XPC, TFIIH and XPA in DNA excision repair.
Resolution7.1 Å
Binding residue
(original residue number in PDB)		E185 K655 F710 R715 H780 R784 H800 H805
Binding residue
(residue number reindexed from 1)		E19 K279 F334 R339 H404 R408 H424 H429
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000404 heteroduplex DNA loop binding
GO:0000405 bubble DNA binding
GO:0003677 DNA binding
GO:0003684 damaged DNA binding
GO:0003697 single-stranded DNA binding
GO:0003713 transcription coactivator activity
GO:0005515 protein binding
GO:0044877 protein-containing complex binding
GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding
GO:0140612 DNA damage sensor activity
Biological Process
GO:0000720 pyrimidine dimer repair by nucleotide-excision repair
GO:0006281 DNA repair
GO:0006289 nucleotide-excision repair
GO:0006298 mismatch repair
GO:0006974 DNA damage response
GO:0009410 response to xenobiotic stimulus
GO:0010224 response to UV-B
GO:0010996 response to auditory stimulus
GO:0031573 mitotic intra-S DNA damage checkpoint signaling
GO:0045893 positive regulation of DNA-templated transcription
GO:0070914 UV-damage excision repair
GO:1901990 regulation of mitotic cell cycle phase transition
Cellular Component
GO:0000109 nucleotide-excision repair complex
GO:0000111 nucleotide-excision repair factor 2 complex
GO:0000785 chromatin
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0043231 intracellular membrane-bounded organelle
GO:0071942 XPC complex
GO:0090734 site of DNA damage

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8ebv, PDBe:8ebv, PDBj:8ebv
PDBsum8ebv
PubMed37076618
UniProtQ01831|XPC_HUMAN DNA repair protein complementing XP-C cells (Gene Name=XPC)

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