Structure of PDB 8dk5 Chain H Binding Site BS01

Receptor Information
>8dk5 Chain H (length=95) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRL
AHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Ligand information
>8dk5 Chain I (length=149) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aagaatcctcagtggtgagtattaacatggaacttactccaacaatacag
atgctgaataaatgtagtctaagtgaaggaagaaggaaaggtgggagctg
ccatcactcagaattgtccagcagggattgtgcaagcttgtgaataaag
Receptor-Ligand Complex Structure
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PDB8dk5 Structural mechanism of LIN28B nucleosome targeting by OCT4.
Resolution2.71 Å
Binding residue
(original residue number in PDB)		R34 K35 E36 I40 Y41
Binding residue
(residue number reindexed from 1)		R3 K4 E5 I9 Y10
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0030527 structural constituent of chromatin
GO:0046982 protein heterodimerization activity
Biological Process
GO:0002227 innate immune response in mucosa
GO:0006334 nucleosome assembly
GO:0019731 antibacterial humoral response
GO:0042742 defense response to bacterium
GO:0050830 defense response to Gram-positive bacterium
GO:0061844 antimicrobial humoral immune response mediated by antimicrobial peptide
Cellular Component
GO:0000786 nucleosome
GO:0005615 extracellular space
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome
GO:0005829 cytosol
GO:0070062 extracellular exosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8dk5, PDBe:8dk5, PDBj:8dk5
PDBsum8dk5
PubMed37327775
UniProtQ16778|H2B2E_HUMAN Histone H2B type 2-E (Gene Name=H2BC21)

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