Structure of PDB 8btp Chain H Binding Site BS01

Receptor Information
>8btp Chain H (length=473) Species: 1053222 (Bacillus cereus MSX-D12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KMNPIVELFIKDFTKEVMEENAAIFAGAGLSMSVGYVSWAKLLEPIAQEI
GLDVNKENDLVSLAQYYCNENQGNRGRINQIILDEFSRKVDLTENHKILA
RLPIHTYWTTAYDRLIEKALEEENKIADVKYTVKQLATTKVKRDAVVYKM
HGDVEHPSEAVLIKDDYEKYSIKMDPYIKALSGDLVSKTFLFVGFSFTDP
NLDYILSRVRSAYERDQRRHYCLIKKEERRPDELEADFEYRVRKQELFIS
DLSRFNIKTIVLNNYNEITEILQRIENNIKTKTVFLSGSAVEYNHWETEH
AEQFIHQLSKELIRKDFNIVSGFGLGVGSFVINGVLEELYMGTIDDDRLI
LRPFPQGKKGEEQWDKYRRDMITRTGVSIFLYGNKIDKGQVVKAKGVQSE
FNISFEQNNYVVPVGATGYIAKDLWNKVNEEFETYYPGADARMKKLFGEL
NNEALSIEELINTIIEFVEILSN
Ligand information
Ligand IDRK3
InChIInChI=1S/C17H21N5O13P2/c23-10-7-3-30-36(26,27)35-37(28,29)31-4-8-13(34-17(33-7)11(10)24)12(25)16(32-8)22-6-19-9-14-18-1-2-21(14)5-20-15(9)22/h1-2,5-8,10-13,16-17,23-25H,3-4H2,(H,26,27)(H,28,29)/t7-,8-,10-,11-,12-,13-,16-,17+/m1/s1
InChIKeyLFJBQYHLOPJAJZ-DLFWLGJNSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7c1cn2cnc3c(c2n1)ncn3C4C(C5C(O4)COP(=O)(OP(=O)(OCC6C(C(C(O6)O5)O)O)O)O)O
CACTVS 3.385O[CH]1[CH](O)[CH]2O[CH]1CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O2)n4cnc5c6nccn6cnc45
OpenEye OEToolkits 2.0.7c1cn2cnc3c(c2n1)ncn3[C@H]4[C@@H]([C@H]5[C@H](O4)COP(=O)(OP(=O)(OC[C@@H]6[C@H]([C@H]([C@@H](O6)O5)O)O)O)O)O
CACTVS 3.385O[C@H]1[C@@H](O)[C@H]2O[C@@H]1CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O2)n4cnc5c6nccn6cnc45
FormulaC17 H21 N5 O13 P2
Name(1S,3S,4R,5R,7R,15R,16S,17R)-5-imidazo[2,1-f]purin-3-yl-10,12-bis(oxidanyl)-10,12-bis(oxidanylidene)-2,6,9,11,13,18-hexaoxa-10$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{3,7}]octadecane-4,16,17-triol;
1''-3'gc(etheno)ADPR
ChEMBL
DrugBank
ZINC
PDB chain8btp Chain H Residue 500 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8btp Activation of Thoeris antiviral system via SIR2 effector filament assembly
Resolution2.75 Å
Binding residue
(original residue number in PDB)
G289 S290 G325 L326 F357 W367 K388 A397 G399 V400 E403
Binding residue
(residue number reindexed from 1)
G288 S289 G324 L325 F354 W364 K385 A394 G396 V397 E400
Annotation score1
Enzymatic activity
Enzyme Commision number 3.2.2.5: NAD(+) glycohydrolase.
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016787 hydrolase activity
Biological Process
GO:0051607 defense response to virus
Cellular Component
GO:0005737 cytoplasm

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:8btp, PDBe:8btp, PDBj:8btp
PDBsum8btp
PubMed38383786
UniProtJ8G6Z1|THSA_BACCS NAD(+) hydrolase ThsA (Gene Name=thsA)

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