Structure of PDB 7v3v Chain H Binding Site BS01
Receptor Information
>7v3v Chain H (length=381) Species:
559292
(Saccharomyces cerevisiae S288C) [
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PPEIKEEMIQLYHDLPGIENEYKLIDKIGEGTFSSVYKAKDITGKITKKF
ASHFWNYGSNYVALKKIYVTSSPQRIYNELNLLYIMTGSSRVAPLCDAKR
VRDQVIAVLPYYPHEEFRTFYRDLPIKGIKKYIWELLRALKFVHSKGIIH
RDIKPTNFLFNLELGRGVLVDFGLAEAQMDNNVNGVDLTKGYPKNETRRI
KRANRAGTRGFRAPEVLMKCGAQSTKIDIWSVGVILLSLLGRRFPMFQSL
DDADSLLELCTIFGWKELRKCAALHGLGFEASGLIWDKPNGYSNGLKEFV
YDLLNKECTIGTFPEYSVAFETFGFLQQELHDAYELKKYQEEIWSDHYWC
FQVLEQCFEMDPQKRSSAEDLLKTPFFNELN
Ligand information
Ligand ID
AGS
InChI
InChI=1S/C10H16N5O12P3S/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(25-10)1-24-28(18,19)26-29(20,21)27-30(22,23)31/h2-4,6-7,10,16-17H,1H2,(H,18,19)(H,20,21)(H2,11,12,13)(H2,22,23,31)/t4-,6-,7-,10-/m1/s1
InChIKey
NLTUCYMLOPLUHL-KQYNXXCUSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.7.6
c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=S)(O)O)O)O)N
CACTVS 3.370
Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=S)[C@@H](O)[C@H]3O
CACTVS 3.370
Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=S)[CH](O)[CH]3O
OpenEye OEToolkits 1.7.6
c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=S)(O)O)O)O)N
ACDLabs 12.01
O=P(O)(OP(=S)(O)O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
Formula
C10 H16 N5 O12 P3 S
Name
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER;
ATP-GAMMA-S;
ADENOSINE 5'-(3-THIOTRIPHOSPHATE);
ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);
ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE
ChEMBL
CHEMBL131890
DrugBank
DB02930
ZINC
ZINC000008295128
PDB chain
7v3v Chain H Residue 2001 [
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Receptor-Ligand Complex Structure
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PDB
7v3v
Structural Insight into the MCM double hexamer activation by Dbf4-Cdc7 kinase.
Resolution
2.9 Å
Binding residue
(original residue number in PDB)
G42 T43 F44 V47 K76 Y122 Y123 H125 T167 L170 D182
Binding residue
(residue number reindexed from 1)
G31 T32 F33 V36 K65 Y111 Y112 H114 T156 L159 D171
Annotation score
4
Enzymatic activity
Enzyme Commision number
2.7.11.1
: non-specific serine/threonine protein kinase.
Gene Ontology
Molecular Function
GO:0004672
protein kinase activity
GO:0004674
protein serine/threonine kinase activity
GO:0005515
protein binding
GO:0005524
ATP binding
GO:0042802
identical protein binding
GO:0044024
histone H2AS1 kinase activity
GO:0046872
metal ion binding
GO:0106310
protein serine kinase activity
Biological Process
GO:0000727
double-strand break repair via break-induced replication
GO:0001100
negative regulation of exit from mitosis
GO:0006270
DNA replication initiation
GO:0006279
premeiotic DNA replication
GO:0006338
chromatin remodeling
GO:0006468
protein phosphorylation
GO:0007165
signal transduction
GO:0016310
phosphorylation
GO:0031503
protein-containing complex localization
GO:0033314
mitotic DNA replication checkpoint signaling
GO:0051301
cell division
GO:0051321
meiotic cell cycle
GO:0060903
positive regulation of meiosis I
GO:1902977
mitotic DNA replication preinitiation complex assembly
GO:1903343
positive regulation of meiotic DNA double-strand break formation
GO:1904968
positive regulation of spindle attachment to meiosis I kinetochore
GO:1905263
positive regulation of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination
GO:1905342
positive regulation of protein localization to kinetochore
GO:1905561
positive regulation of kinetochore assembly
Cellular Component
GO:0000775
chromosome, centromeric region
GO:0000785
chromatin
GO:0005634
nucleus
GO:0005813
centrosome
GO:0031431
Dbf4-dependent protein kinase complex
View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:7v3v
,
PDBe:7v3v
,
PDBj:7v3v
PDBsum
7v3v
PubMed
35296675
UniProt
P06243
|CDC7_YEAST Cell division control protein 7 (Gene Name=CDC7)
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