Structure of PDB 7phc Chain H Binding Site BS01

Receptor Information
>7phc Chain H (length=128) Species: 272634 (Mycoplasmoides pneumoniae M129) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QSYYGLGRRKSSSAKVYLTPTQDKGKITVNRRDPSEYFPNKLVIQDMEQP
LDLTDLKKNFDINVVVKGGGFTGQAGAIRLGIVRALLQFNPELKKILKSK
KLTTRDKRVKERKKFGLYGARRAPQFTK
Ligand information
>7phc Chain 5 (length=1493) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucugagaguuugauccuggcucaggauuaacgcuggcggcaugccuaaua
caugcaagucgaucgaaaguaguaauacuuuagaggcgaacgggugagua
acacguauccaaucuaccuuauaaugggggauaacuaguugaaagacuag
cuaauaccgcauaagaacuuugguucgaaucaaaguugaaaggaccugca
aggguucguuauuugaugagggugcgccauaucagcuaguugguggggua
acggccuaccaaggcaaugacguguagcuaugcugagaaguagaauagcc
acaaugggacugagacacggcccauacuccuacgggaggcagcaguaggg
aauuuuucacaaugagcgaaagcuugauggagcaaugccgcgugaacgau
gaaggucuuuaagauuguaaaguucuuuuauuugggaagaaugacuuuag
cagguaauggcuagaguuugacuguaccauuuugaauaagugacgacuaa
cuaugugccagcagucgcgguaauacauaggucgcaagcguuauccggau
uuauugggcguaaagcaagcgcaggcggauugaaaagucugguguuaaag
gcagcugcuuaacaguuguaugcauuggaaacuauuaaucuagagugugg
uagggaguuuuggaauuucauguggagcggugaaaugcguagauauauga
aggaacaccaguggcgaaggcgaaaacuuaggccauuacugacgcuuagg
cuugaaaguguggggagcaaauaggauuagauacccuaguaguccacacc
guaaacgauagauacuagcugucggggcgauccccucgguagugaaguua
acacauuaaguaucucgccuggguaguacauucgcaagaaugaaacucaa
acggaauugacggggacccgcacaagugguggagcauguugcuuaauucg
acgguacacgaaaaaccuuaccuagacuugacauccuuggcaaaguuaug
gaaacauaaugccgagugacagguggugcaugguugucgucagcucgugu
cgugagauguuggguuaagucccgcaacgagcgcaacccuuaucguuagu
uacauugucuagcgagacugcuaaugcaaauuggaggaaggaagggauga
cgucaaaucaucaugccccuuaugucuagggcugcaaacgugcuacaaug
gccaauacaaacagucgccagcuuguaaaagugagcaaaucuguaaaguu
ggucucaguucggauugagggcugcaauucguccucaugaagucggaauc
acuaguaaucgcgaaucagcuaugucgcggugaauacguucucgggucuu
guacacaccgcccgucaaacuaugaaagcugguaauauuuaaaaacgugu
ugcuaaccauuaggaagcgcaugucaaggauagcaccggugauuggaguu
aagucguaacaagguaccccuacgagaacguggggguggauca
.....<<<<..[.(((..>>>>.<<<<.<<<<....<<.<<<<..<..<<
..<<<..<<<..<<.<<<<<<....>>>>>>.>>>>>......<<.....
.....<.<<<..<<......<<<<<<.<<.....<<<<<<....>>>>>>
......>>.>.....<<<<<<..<<.>>...>>>>>>....<<<<<<...
.>>>>>>>>>>>.....>>>>>.>...<<<....<<<..<<<<<<<<...
....>>>>>>>>>>>......>>>..<<<<<<<<....>>>...>>>>>.
>>.<<<<<............>>>>>.<<<<....>>>>...>>>.>>>..
...<..<<<...<<<<<....>>>>.>>>>.>>>.>>.>>...<<<<...
....<<<.....>>>......>>>>...<....<<.......<<<<<<<<
<........>>>>>>>>>........>>.....>.....<<<<<(((...
<<<<<.....<<.)))>>.......>>>>>>>>>>...>>>>>>>>....
......<<<((.....<<<<....<<.<<<<<<..<<<<<.<<<<.....
<<<<<<<.....>>>>>>>..>>>>.>>>..>>.>>>>>>...<<<.<<<
<...<<<<<<<....<<<<<<<<<..<<........>>.....>>>>>>>
>>...........<<....>>.>>>>>>>..>>>>..>>>...>>....>
>>>....<<<<<<....<...<<<<.........>>>>...>.>>>>>>.
.........<<<<.<..<<<<<<<<<<......>>>>>>>>>>...<<..
))>>.....>.>>>>.>>>.<<<......<<<<....>>>>....>>>..
..))).]<<<<<.<<<<<<<.<<..<<<<...<<<<<<<<<<......<<
........>>..........<<<<<<.........<..<.....<<<<<<
....>>>>>>..>..>.....<<.<<<...<<<<<<.<....<<<<<<<<
<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<.<.
.........>>>>>>......<<........>>.........>>>>....
.>.>.>>>...>>.>>>>>.....>>>>>>...>>.>>>>>>>>.....<
<<<<<......<<<..<<..<<<<....>>>>..>>....>>>.....>>
>>>>...........<<<<<<<........>>>>>>>...........>>
>>.....<<<<<<<..........>>>>>>>......>>...>>>>>>>>
>>.>>.......<<.<.<<<<.<<...<<<<<<..<<<<.....<<<<<<
.<<<..<<....>>.>>>>>>>>>....>>>>..>>>>>>...>>.>>>>
..>.>>.........<<<<<<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7phc Visualizing translation dynamics at atomic detail inside a bacterial cell.
Resolution9.9 Å
Binding residue
(original residue number in PDB)
Y7 L9 R11 K13 S14 K18 N33 R34 Y40 P42 N43 K44 N66 K70 G71 G72 G73 F74 T75 G76 Q77 K97 K98 K101 T107 R108 K110 R111 V112 K113 E114 R115 K116 K117 F118 Y121 A123 R124 R125 P127 Q128 F129 T130 K131
Binding residue
(residue number reindexed from 1)
Y4 L6 R8 K10 S11 K15 N30 R31 Y37 P39 N40 K41 N63 K67 G68 G69 G70 F71 T72 G73 Q74 K94 K95 K98 T104 R105 K107 R108 V109 K110 E111 R112 K113 K114 F115 Y118 A120 R121 R122 P124 Q125 F126 T127 K128
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function

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Biological Process

View graph for
Cellular Component
External links
PDB RCSB:7phc, PDBe:7phc, PDBj:7phc
PDBsum7phc
PubMed36171285
UniProtP75179|RS9_MYCPN Small ribosomal subunit protein uS9 (Gene Name=rpsI)

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