Structure of PDB 6vl9 Chain H Binding Site BS01

Receptor Information

>6vl9 Chain H (length=210) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

QIQLVQSGPELKKPGETVKISCKASGYTFKNYGMNWVKQAPGKGLKWMGW
INTYTGQPIYANDFKGRFAFSLETSASTAYLQINNLKNEDTATYFCARDW
GPYWGQGTLVIVSAASTKGPSVFPLAPSSGTAALGCLVKDYFPEPVTVSW
NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSN
TKVDKKVEPK

Ligand information

Ligand ID

9FO

InChI

InChI=1S/C40H82O21/c41-1-3-43-5-7-45-9-11-47-13-15-49-17-19-51-21-23-53-25-27-55-29-31-57-33-35-59-37-39-61-40-38-60-36-34-58-32-30-56-28-26-54-24-22-52-20-18-50-16-14-48-12-10-46-8-6-44-4-2-42/h41-42H,1-40H2

InChIKey

ZHMUMDLGQBRJIW-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 12.01 CACTVS 3.385	OCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCO
OpenEye OEToolkits 2.0.6	C(COCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCO)O

Formula

C40 H82 O21

Name

3,6,9,12,15,18,21,24,27,30,33,36,39,42,45,48,51,54,57-nonadecaoxanonapentacontane-1,59-diol

ChEMBL

DrugBank

ZINC

PDB chain

6vl9 Chain H Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	6vl9 Structure of an anti-PEG antibody reveals an open ring that captures highly flexible PEG polymers
Resolution	2.63 Å
Binding residue (original residue number in PDB)	N31 Y32 D95 W96 G97
Binding residue (residue number reindexed from 1)	N31 Y32 D99 W100 G101
Annotation score	1

External links

PDB	RCSB:6vl9, PDBe:6vl9, PDBj:6vl9
PDBsum	6vl9
PubMed

[Back to BioLiP]