Structure of PDB 6qzo Chain H Binding Site BS01
Receptor Information
>6qzo Chain H (length=361) Species:
1386082
(Cellulomonas bogoriensis 69B4 = DSM 16987) [
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AGPGDVVVPCHGEHQAGIVTPPPSFIALVALDLASTSDRASVERLLRVWT
VDIERLTTGRPGLADSEPELALVPAALTVTVGFGPGLLTAAGLRHRAPAW
LHPLPPFGIDRLDPAWCDGDVVLQVCADDRTTLAHAVRVLTKEAQGLASV
RWVQRGFRRSPGISEPDGTSMRNLMGQVEGTANLDPRTDPDLLWHRDGEP
GWLTGGTSMVVRRIAMNLDTWDELSRGAREATIGRTLRTGAPLTGRAEHD
EPDLEALDDHGRPVIDLEAHIRRARPTQREETFLRRAYNYDEAPPPGRAS
DSGLLFVTYQRDVDAQFTPVQRRLDAADLLNEWTFPVGSAVFAVPGGWSA
GEYVGQRLLEG
Ligand information
Ligand ID
HEM
InChI
InChI=1S/C34H34N4O4.Fe/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25;/h7-8,13-16H,1-2,9-12H2,3-6H3,(H4,35,36,37,38,39,40,41,42);/q;+2/p-2/b25-13-,26-13-,27-14-,28-15-,29-14-,30-15-,31-16-,32-16-;
InChIKey
KABFMIBPWCXCRK-RGGAHWMASA-L
SMILES
Software
SMILES
OpenEye OEToolkits 1.7.6
Cc1c2n3c(c1CCC(=O)O)C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8C)C=C)C(=C(C7=C2)C)C=C)C)CCC(=O)O
CACTVS 3.385
CC1=C(CCC(O)=O)C2=Cc3n4[Fe]5|6|N2=C1C=c7n5c(=CC8=N|6C(=Cc4c(C)c3CCC(O)=O)C(=C8C=C)C)c(C)c7C=C
ACDLabs 12.01
C=1c3c(c(c4C=C5C(=C(C=6C=C7C(=C(C8=CC=2C(=C(C=1N=2[Fe](n34)(N5=6)N78)CCC(=O)O)C)\C=C)C)\C=C)C)C)CCC(=O)O
Formula
C34 H32 Fe N4 O4
Name
PROTOPORPHYRIN IX CONTAINING FE;
HEME
ChEMBL
DrugBank
DB18267
ZINC
PDB chain
6qzo Chain H Residue 401 [
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Receptor-Ligand Complex Structure
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PDB
6qzo
Characterization of a New DyP-Peroxidase from the Alkaliphilic Cellulomonad, Cellulomonas bogoriensis.
Resolution
2.4 Å
Binding residue
(original residue number in PDB)
Q199 V200 E201 G202 T203 A204 I236 H292 A296 R307 L326 F328 L346 L352
Binding residue
(residue number reindexed from 1)
Q177 V178 E179 G180 T181 A182 I214 H270 A274 R285 L304 F306 L324 L330
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0004601
peroxidase activity
GO:0020037
heme binding
GO:0046872
metal ion binding
Biological Process
GO:0098869
cellular oxidant detoxification
Cellular Component
GO:0005829
cytosol
View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:6qzo
,
PDBe:6qzo
,
PDBj:6qzo
PDBsum
6qzo
PubMed
30934796
UniProt
A0A0A0BZU2
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