Structure of PDB 6k0r Chain H Binding Site BS01

Receptor Information
>6k0r Chain H (length=318) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVE
LIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST
EIKKTEVLMENFRRAIGLRIIQDVTLHDLDVANARTEITDKLRGEINKVV
NKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNR
GNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEG
INISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEI
SELFYDAKSSAKILADQQ
Ligand information
Ligand IDCUU
InChIInChI=1S/C10H15N5O9P2/c11-8-7-9(13-3-12-8)15(4-14-7)10-6(16)1-5(23-10)2-22-26(20,21)24-25(17,18)19/h3-6,10,16H,1-2H2,(H,20,21)(H2,11,12,13)(H2,17,18,19)/t5-,6+,10+/m0/s1
InChIKeyOBEBFUHFXYDSAW-BAJZRUMYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7c1nc(c2c(n1)n(cn2)[C@H]3[C@@H](C[C@H](O3)COP(=O)(O)OP(=O)(O)O)O)N
OpenEye OEToolkits 2.0.7c1nc(c2c(n1)n(cn2)C3C(CC(O3)COP(=O)(O)OP(=O)(O)O)O)N
CACTVS 3.385Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(O)=O)C[C@H]3O
CACTVS 3.385Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)C[CH]3O
FormulaC10 H15 N5 O9 P2
Name[(2~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-oxolan-2-yl]methyl phosphono hydrogen phosphate
ChEMBL
DrugBank
ZINC
PDB chain6k0r Chain H Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6k0r Chemical perturbations reveal that RUVBL2 regulates the circadian phase in mammals.
Resolution2.502 Å
Binding residue
(original residue number in PDB)
S17 H18 H20 L39 V40 G73 G75 K76 T77 Y366 I374
Binding residue
(residue number reindexed from 1)
S13 H14 H16 L35 V36 G69 G71 K72 T73 Y233 I241
Annotation score3
Enzymatic activity
Enzyme Commision number 3.6.4.12: DNA helicase.
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0008094 ATP-dependent activity, acting on DNA
GO:0016887 ATP hydrolysis activity

View graph for
Molecular Function
External links
PDB RCSB:6k0r, PDBe:6k0r, PDBj:6k0r
PDBsum6k0r
PubMed32376767
UniProtQ9Y265|RUVB1_HUMAN RuvB-like 1 (Gene Name=RUVBL1)

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