Structure of PDB 6db9 Chain H Binding Site BS01

Receptor Information
>6db9 Chain H (length=219) Species: 32630 (synthetic construct) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWVAS
ISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARQG
YRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSGGTAALGCLVKDYF
PEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYIC
NVNHKPSNTKVDKKVEPKS
Ligand information
>6db9 Chain R (length=60) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggaugcgccuugaaaagccugcgaaacacgcagcuggugaaugacagcua
uggcgcaucc
<<<<<<<<<...........<<<.....>>><<<<<........>>>>>.
.>>>>>>>>>
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6db9 Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif.
Resolution2.025 Å
Binding residue
(original residue number in PDB)		Y34 Y57 S58 S60 Q102 Y104 R105 R106 R110
Binding residue
(residue number reindexed from 1)		Y31 Y54 S55 S57 Q99 Y101 R102 R103 R107
Binding affinityPDBbind-CN: Kd=708nM
External links