Structure of PDB 6a9k Chain H Binding Site BS01

Receptor Information
>6a9k Chain H (length=220) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EVMLVESGGGLVKPGGSLKLSCAASEFTFSTYIMSWVRQTPEKRLEWVAT
ISSSGTYTYYRDSVKGRFTVSRDNANNILYLQMSSLRSEDTALYYCARRD
YYDGFTYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGY
FPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTC
NVAHPASSTKVDKKIVPRDC
Ligand information
Ligand ID9T0
InChIInChI=1S/C25H25Cl2F3N3O11P/c26-22(27)23(37)32-18(12-43-20(36)3-1-2-19(34)35)21(15-6-10-17(11-7-15)33(39)40)44-45(41,42)13-14-4-8-16(9-5-14)31-24(38)25(28,29)30/h4-11,18,21-22H,1-3,12-13H2,(H,31,38)(H,32,37)(H,34,35)(H,41,42)/t18-,21-/m1/s1
InChIKeyDNCOXYFMDXAPCJ-WIYYLYMNSA-N
SMILES
SoftwareSMILES
CACTVS 3.385OC(=O)CCCC(=O)OC[CH](NC(=O)C(Cl)Cl)[CH](O[P](O)(=O)Cc1ccc(NC(=O)C(F)(F)F)cc1)c2ccc(cc2)[N+]([O-])=O
CACTVS 3.385OC(=O)CCCC(=O)OC[C@@H](NC(=O)C(Cl)Cl)[C@H](O[P](O)(=O)Cc1ccc(NC(=O)C(F)(F)F)cc1)c2ccc(cc2)[N+]([O-])=O
ACDLabs 12.01OC(=O)CCCC(OCC(NC(C(Cl)Cl)=O)C(c1ccc([N+]([O-])=O)cc1)OP(Cc2ccc(cc2)NC(C(F)(F)F)=O)(O)=O)=O
OpenEye OEToolkits 2.0.6c1cc(ccc1CP(=O)(O)OC(c2ccc(cc2)[N+](=O)[O-])C(COC(=O)CCCC(=O)O)NC(=O)C(Cl)Cl)NC(=O)C(F)(F)F
OpenEye OEToolkits 2.0.6c1cc(ccc1CP(=O)(O)O[C@H](c2ccc(cc2)[N+](=O)[O-])[C@@H](COC(=O)CCCC(=O)O)NC(=O)C(Cl)Cl)NC(=O)C(F)(F)F
FormulaC25 H25 Cl2 F3 N3 O11 P
Name5-[(2R,3R)-2-[2,2-bis(chloranyl)ethanoylamino]-3-(4-nitrophenyl)-3-[oxidanyl-[[4-[2,2,2-tris(fluoranyl)ethanoylamino]phenyl]methyl]phosphoryl]oxy-propoxy]-5-oxidanylidene-pentanoic acid
ChEMBL
DrugBank
ZINC
PDB chain6a9k Chain H Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6a9k Crystal structure of the complex of the hydrolytic antibody Fab 9C10 with a transition-state analog
Resolution1.9 Å
Binding residue
(original residue number in PDB)
I33 W47 T50 S52 Y56 Y58 R95 Y97 Y98 F100a
Binding residue
(residue number reindexed from 1)
I33 W47 T50 S52 Y57 Y59 R99 Y101 Y102 F105
Annotation score1
External links