Structure of PDB 5z2c Chain H Binding Site BS01

Receptor Information
>5z2c Chain H (length=423) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NNQKVVAVLLQECKQVLDQLLLEAPDVSEEDKSEDQRCRALLPSELRTLI
QEAKEMKWPFVPELKDVIGAGLQQLLASLRASILARDCAAAAAIVFLVDR
FLYGLDVSGKLLQVAKGLHKLQPATPIAPQVVIRQARISVNSGKLLKAEY
ILSSLISNNGATGTWLYRNESDKVLVQSVCIQIRGQILQKLGMWYEAAEL
IWASIVGYLALPQPDKKGLSTSLGILADIFVSMSKNDYEKFKNNPQINLS
LLKEFDHHLLSAAEACKLAAAFSAYTPLFVLTAVNIRGTCLLSYSSSNDC
PPELKNLHLCEAKEAFEIGLLTKPVTGKQELHSFVKAAFGLTTVHRRLHG
ETGTVHAASQLCKEAMGKLYNFSTSSRSQDREALSQEVMSVIAQVKEHLQ
VQSFSNDRSYVPESFECRLDKLI
Ligand information
Ligand IDAYU
InChIInChI=1S/C17H27N5O16P2/c18-14-7-15(20-3-19-14)22(4-21-7)16-11(28)8(25)6(35-16)2-34-39(30,31)38-40(32,33)37-17-12(29)9(26)10(27)13(36-17)5(24)1-23/h3-6,8-13,16-17,23-29H,1-2H2,(H,30,31)(H,32,33)(H2,18,19,20)/t5-,6+,8+,9-,10-,11+,12-,13+,16+,17-/m0/s1
InChIKeyKMSFWBYFWSKGGR-DTBZDYEHSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)[C@H](CO)O)O)O)O)O)O)N
CACTVS 3.385Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[CH]4O[CH]([CH](O)CO)[CH](O)[CH](O)[CH]4O)[CH](O)[CH]3O
OpenEye OEToolkits 2.0.6c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OC4C(C(C(C(O4)C(CO)O)O)O)O)O)O)N
CACTVS 3.385Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[C@@H]4O[C@H]([C@@H](O)CO)[C@@H](O)[C@H](O)[C@@H]4O)[C@@H](O)[C@H]3O
FormulaC17 H27 N5 O16 P2
Name[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2S,3S,4S,5S,6R)-6-[(1S)-1,2-bis(oxidanyl)ethyl]-3,4,5-tris(oxidanyl)oxan-2-yl] hydrogen phosphate
ChEMBL
DrugBank
ZINCZINC000008551979
PDB chain5z2c Chain H Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5z2c Alpha-kinase 1 is a cytosolic innate immune receptor for bacterial ADP-heptose.
Resolution2.594 Å
Binding residue
(original residue number in PDB)
F61 R116 Y119 Q146 R150 R153 Q198 Y224 D231 K233 S236 T237 F295
Binding residue
(residue number reindexed from 1)
F60 R100 Y103 Q130 R134 R137 Q182 Y208 D215 K217 S220 T221 F279
Annotation score3
Enzymatic activity
Enzyme Commision number 2.7.11.1: non-specific serine/threonine protein kinase.
Gene Ontology
Molecular Function
GO:0004674 protein serine/threonine kinase activity

View graph for
Molecular Function
External links
PDB RCSB:5z2c, PDBe:5z2c, PDBj:5z2c
PDBsum5z2c
PubMed30111836
UniProtQ96QP1|ALPK1_HUMAN Alpha-protein kinase 1 (Gene Name=ALPK1)

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