Structure of PDB 5v6l Chain H Binding Site BS01

Receptor Information
>5v6l Chain H (length=220) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QEQLVESGGGLVKPGGTLTLTCTASGFSFSSGFFMCWVRQAPGKGLEWIG
CIYGGSNDNTYYANWAKGRFTISKTSSTTVTLQMTSRTAADTATYFCARD
AGTSGYIAYNLWGPGTLVTVSSGQPKAPSVFPLAPCCGDTPSSTVTLGCL
VKGYLPEPVTVTWNSGTLTNGVRTFPSVRQSSGLYSLSSVVSVTSSSQPV
TCNVAHPATNTKVDKTVAPS
Ligand information
>5v6l Chain P (length=14) Species: 11676 (Human immunodeficiency virus 1) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
HIGPGRAFYTTGEI
Receptor-Ligand Complex Structure
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PDB5v6l Increased epitope complexity correlated with antibody affinity maturation and a novel binding mode revealed by structures of rabbit antibodies against the third variable loop (V3) of HIV-1 gp120.
Resolution2.549 Å
Binding residue
(original residue number in PDB)		G32 F34 Y52 N56 Y58 D95 G97 S99 G100 Y100A I100B
Binding residue
(residue number reindexed from 1)		G32 F34 Y53 N59 Y61 D100 G102 S104 G105 Y106 I107
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