Structure of PDB 5tc1 Chain H Binding Site BS01

Receptor Information
>5tc1 Chain H (length=129) Species: 329852 (Emesvirus zinderi) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKVTCSVRQ
SSAQNRKYTIKVEVPKVATQTVGGVELPVAAWRSYLNMELTIPIFATNSD
CELIVKAMQGLLKDGNPIPSAIAANSGIY
Ligand information
>5tc1 Chain R (length=242) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggaauuccauuccccguucgcguuuacgcggacggcgcaaaccauugcgc
gcgacguaucgugcacuagguauaguguuacaaaguaaucuacuaauaga
augaggauuacccaugaagaaguucaacucuugacaaauccuuguccugc
cuguaaggagugaucaaucgaucagacgauauuauauguccgguuuuaaa
ccgauucccucaggaguguaacuagcugcuuggcuaguuacc
<<<<<...>>>>><<<<<<<<<....>>>>>>>>><<<<<....>>>>>.
<<<<....>>>>.<<<<......>>>><<<<...>>>><<<<....>>>>
<<<.<<....>>>>>.<<<.<<<...>>>>>>.<<<<....>>>>..<.<
<<...>>>>.<<<<<....>>>>><<<.<<<...>>>>>><<<<<...>>
>>><<<<<....>>>>><<.<<<.....<...>..>>.>>>.
Receptor-Ligand Complex Structure
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PDB5tc1 In situ structures of the genome and genome-delivery apparatus in a single-stranded RNA virus.
Resolution3.6 Å
Binding residue
(original residue number in PDB)		V29 T45 S47 R49 S51 N55 K57 K61
Binding residue
(residue number reindexed from 1)		V29 T45 S47 R49 S51 N55 K57 K61
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005198 structural molecule activity
GO:0042802 identical protein binding
Biological Process
GO:0006417 regulation of translation
GO:1904972 negative regulation of viral translation
Cellular Component
GO:0019028 viral capsid
GO:0039617 T=3 icosahedral viral capsid

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5tc1, PDBe:5tc1, PDBj:5tc1
PDBsum5tc1
PubMed27992877
UniProtP03612|CAPSD_BPMS2 Capsid protein

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