Structure of PDB 5anb Chain H Binding Site BS01

Receptor Information
>5anb Chain H (length=52) Species: 44689 (Dictyostelium discoideum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
IEPSLVILARKYKCDKMICRKCYARLHPRAVNCRKKKCGHSNNLRPKKKL
LK
Ligand information
>5anb Chain N (length=1162) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
auuagcaguuucgggggcguaaugcucucagcugauucucaaacucugaa
cauuuuugguaagcagaacuggcgauguggguugaaccaaauauugggau
aagacgucuaacauucacuaauagauaccacaaaagguguuaguucauua
agacagcaggacgguggccauggaagucgguauccgcuaaggagugugua
acaacucaccugccaaauggacuagcccugaaaauggaugacgcuagcag
uggauggucgaugcccaaucguuaaaagaagugauaauacuuuuaacaau
ccaacuguuuaauuaaaacaaagcauugcgauaagcuuaaaagcuuuuga
cgcaaugugauuucugcccagugcucugaaugucaaagugaagagauuca
accuagcacggguaaacggcgggaguaacuaugacucucuuaagguagcc
aaaugccucgucaucuaauuagugacgcgcaugaauggaucaaugagauu
cccacugucccuaacuacuauacagcgaaaccacugcaaggggaacgggc
cuugcaaaaacagcggggaaagaagacccuguugagcuugacucuagucu
gauauuaacaguuucagguggggaguuuggcuggggcggcacauuuguua
aaagauaacgcaaguguccaaaggcaggcucagugagaacagaaaucuca
cguagaguaaaagggcaaaagccugcuugauucugauuuucaguacuaau
cggaacugggaaaccagggccuaucgauccuuuaugugcuuaaaucuuaa
cccuagaggugucagaaaaguuaccacagggauaacuggcuuguggcagc
caagcgcucauagcgacgcugcuuuuugauccuucgaugucggcucuucu
uaucauugugaagcagaauucacaaaguguuggauuguucacccacuaac
aaggaacgugagcuggguuuagaccgucgugagacagguuaguuuuaccc
uacuguugucaauuguuugcguaauaguagcaugauuuaguacgagagga
acugucaugccggaucacuggucuguagguuuauuugacaaaauagugac
cugccgcuaccauccguuggauaauggcugaacgccucuaagucagaauc
cauucuagaaac
.....<<<<...<<<<<<.....>>>>>>.>>>>................
<<.<<<<<.....>>>>>.>>......<<<......>>>...<<<<<<..
..<<<(((...<<<<<<<.....<..........<<<.<<<<<<<<<<..
.....<<<<<.<<<..<<<.........>>>..>>>.........<<...
...>>...>>>>>...>>>>>>>>>>>>>..........))).>.....>
>>>>>>>>>....>>>>>>.<<<<<<<<...........>>>>>>>><<<
<<<..<<<.........>>>..<<<<<<<....<<<<....>>>>.....
.>>>>>>>...<<..<<<..<<<<<<....<<<.....<<<<....>>>>
.....>>>.>>>>..>>>>><<<<<<.......>>>>>>........<..
.........<<<<<.......>>>>>.....>.....>>....>>.>>>>
....................................<<<<<........>
>>>>....<<<<<..<<<.<<......<<<<.<<<<<<..<<<<<.<<<<
<<.<<.....>>.>>>>>>..>>>>>...<<<.....>>>..<<<<<<..
.........>>>>>>..<<...<<<<<<<...<<<<<<.......>>>>>
>.....<<...(((>>....>>>>>>>...<<<<<<<<.........>>>
>>>>>.<<<....>>>.>>)))......<<<<<<...<.<<.......>>
.>.>>>>>>.........>>>>..>>>>>>.......<<.<.<.<<<<<<
...<<.......>>...>>>>>>...>>.>.>.......<<<<<..<<<<
<..<<<<<<<<<......>>>>>>..>>>.<<<.<.....>.>>>.....
>>>>>......>>>.>>....<<<<<<<....>>>.>>>>....>>..>>
>.>>>>>.............<<..<<<..<<<<<<<..............
...>>>>>>><<<<<...<<<<....<<<<<<<<<<....>>>>>..>>>
>>...>>>>..>>>>>.<<<<...<<<<<...........>>>>>...>>
>>..>>>...>>
Receptor-Ligand Complex Structure
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PDB5anb Mechanism of Eif6 Release from the Nascent 60S Ribosomal Subunit
Resolution4.1 Å
Binding residue
(original residue number in PDB)		K16 I18 R20 Y23 A24 R25 H27 R29 V31 R34 K35 K36 C38 G39 H40 N42 R45 K47 K48
Binding residue
(residue number reindexed from 1)		K16 I18 R20 Y23 A24 R25 H27 R29 V31 R34 K35 K36 C38 G39 H40 N42 R45 K47 K48
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5anb, PDBe:5anb, PDBj:5anb
PDBsum5anb
PubMed26479198
UniProtP14794|RL40_DICDI Ubiquitin-ribosomal protein eL40 fusion protein (Gene Name=ubqB)

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