Structure of PDB 3qcu Chain H Binding Site BS01
Receptor Information
>3qcu Chain H (length=219) Species:
9606
(Homo sapiens) [
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EVQLVQSGAEVKKPGESLKISCQAFGYGFINYLIEWIRQMPGQGLEWIGL
INPGSDYTNYNENFKGQATLSADKSSSTAYLQWSSLKASDTAMYFCARRF
GYYGSGNYFDYWGQGTMVTVSSASTKGPSVFPLAPSSGGTAALGCLVKDY
FPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYI
CNVNHKPSNTKVDKRVEPK
Ligand information
Ligand ID
NKN
InChI
InChI=1S/C17H35O7P/c1-2-3-4-5-6-7-8-9-10-11-12-13-17(19)23-14-16(18)15-24-25(20,21)22/h16,18H,2-15H2,1H3,(H2,20,21,22)/t16-/m1/s1
InChIKey
FAZBDRGXCKPVJU-MRXNPFEDSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.7.0
CCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)O)O
CACTVS 3.370
CCCCCCCCCCCCCC(=O)OC[CH](O)CO[P](O)(O)=O
ACDLabs 12.01
O=P(OCC(O)COC(=O)CCCCCCCCCCCCC)(O)O
OpenEye OEToolkits 1.7.0
CCCCCCCCCCCCCC(=O)OCC(COP(=O)(O)O)O
CACTVS 3.370
CCCCCCCCCCCCCC(=O)OC[C@@H](O)CO[P](O)(O)=O
Formula
C17 H35 O7 P
Name
(2R)-2-hydroxy-3-(phosphonooxy)propyl tetradecanoate;
14:0 LPA;
myristoyl lysophosphatidic acid
ChEMBL
CHEMBL1615121
DrugBank
ZINC
PDB chain
3qcu Chain H Residue 215 [
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Receptor-Ligand Complex Structure
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PDB
3qcu
Biochemical and structural characterization of lysophosphatidic Acid binding by a humanized monoclonal antibody.
Resolution
1.979 Å
Binding residue
(original residue number in PDB)
L33 Y56 F96 G97 Y98 Y99 G100 S100A G100B N100C Y100D
Binding residue
(residue number reindexed from 1)
L33 Y57 F100 G101 Y102 Y103 G104 S105 G106 N107 Y108
Annotation score
1
Enzymatic activity
Enzyme Commision number
?
External links
PDB
RCSB:3qcu
,
PDBe:3qcu
,
PDBj:3qcu
PDBsum
3qcu
PubMed
21392506
UniProt
Q6N089
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