Structure of PDB 3oaz Chain H Binding Site BS01

Receptor Information
>3oaz Chain H (length=223) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EVQLVESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVAS
ISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARKG
SDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGC
LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG
TQTYICNVNHKPSNTKVDKKVEP
Ligand information
Ligand ID2M5
InChIInChI=1S/C8H16O6/c1-3(9)7-5(11)4(10)6(12)8(13-2)14-7/h3-12H,1-2H3/t3-,4-,5-,6-,7+,8-/m0/s1
InChIKeyPNWOVLBMFHSUMR-IHKZFYOVSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C[C@@H]([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)OC)O)O)O)O
CACTVS 3.370CO[C@H]1O[C@H]([C@H](C)O)[C@@H](O)[C@H](O)[C@@H]1O
ACDLabs 12.01OC1C(O)C(O)C(OC1OC)C(O)C
CACTVS 3.370CO[CH]1O[CH]([CH](C)O)[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 1.7.0CC(C1C(C(C(C(O1)OC)O)O)O)O
FormulaC8 H16 O6
Namemethyl 7-deoxy-L-glycero-alpha-D-manno-heptopyranoside;
methyl 7-deoxy-L-glycero-alpha-D-manno-heptoside;
methyl 7-deoxy-L-glycero-D-manno-heptoside;
methyl 7-deoxy-L-glycero-manno-heptoside
ChEMBL
DrugBank
ZINCZINC000058633204
PDB chain3oaz Chain H Residue 237 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3oaz A nonself sugar mimic of the HIV glycan shield shows enhanced antigenicity.
Resolution1.75 Å
Binding residue
(original residue number in PDB)
A31 H32 T33 K95 G96 S100A D100B N100C D100D
Binding residue
(residue number reindexed from 1)
A31 H32 T33 K99 G100 S105 D106 N107 D108
Annotation score1
External links