Structure of PDB 2ykr Chain H Binding Site BS01

Receptor Information
>2ykr Chain H (length=129) Species: 668369 (Escherichia coli DH5[alpha]) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKV
EGDTKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGI
AVVSTSKGVMTDRAARQAGLGGEIICYVA
Ligand information
>2ykr Chain A (length=1533) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aauugaagaguuugaucauggcucagauugaacgcuggcggcaggccuaa
cacaugcaagucgaacgguaacaggaagaagcuugcuucuuugcugacga
guggcggacgggugaguaaugucugggaaacugccugauggagggggaua
acuacuggaaacgguagcuaauaccgcauaacgucgcaagaccaaagagg
gggaccuucgggccucuugccaucggaugugcccagaugggauuagcuag
uaggugggguaacggcucaccuaggcgacgaucccuagcuggucugagag
gaugaccagccacacuggaacugagacacgguccagacuccuacgggagg
cagcaguggggaauauugcacaaugggcgcaagccugaugcagccaugcc
gcguguaugaagaaggccuucggguuguaaaguacuuucagcggggagga
agggaguaaaguuaauaccuuugcucauugacguuacccgcagaagaagc
accggcuaacuccgugccagcagccgcgguaauacggagggugcaagcgu
uaaucggaauuacugggcguaaagcgcacgcaggcgguuuguuaagucag
augugaaauccccgggcucaaccugggaacugcaucugauacuggcaagc
uugagucucguagagggggguagaauuccagguguagcggugaaaugcgu
agagaucuggaggaauaccgguggcgaaggcggcccccuggacgaagacu
gacgcucaggugcgaaagcguggggagcaaacaggauuagauacccuggu
aguccacgccguaaacgaugucgacuuggagguugugcccuugaggcgug
gcuuccggagcuaacgcguuaagucgaccgccuggggaguacggccgcaa
gguuaaaacucaaaugaauugacgggggcccgcacaagcgguggagcaug
ugguuuaauucgaugcaacgcgaagaaccuuaccuggucuugacauccac
ggaaguuuucagagaugagaaugugccuucgggaaccgugagacaggugc
ugcauggcugucgucagcucguguugugaaauguuggguuaagucccgca
acgagcgcaacccuuauccuuuguugccagcgguccggccgggaacucaa
aggagacugccagugauaaacuggaggaagguggggaugacgucaaguca
ucauggcccuuacgaccagggcuacacacgugcuacaauggcgcauacaa
agagaagcgaccucgcgagagcaagcggaccucauaaagugcgucguagu
ccggauuggagucugcaacucgacuccaugaagucggaaucgcuaguaau
cguggaucagaaugccacggugaauacguucccgggccuuguacacaccg
cccgucacaccaugggaguggguugcaaaagaaguagguagcuuaaccuu
cgggagggcgcuuaccacuuugugauucaugacuggggugaagucguaac
aagguaaccguaggggaaccugcgguuggauca
.......<<<<..[.(((..>>>>......<<<<<..<<<<<........
<<..<<...........<....<.....................>..>..
...........<..........<<<<........<<<<<...<.<.....
.<<............>>.......>.>....................<<.
.....<....>....>>....>>>>>......>>>>..<<<.........
.<<<<.............>>>>..........>>>..<<<<..<<....>
>.....>>>>..>..<<<<............>>>>...............
...>>.>>.........<<.....<<<<....>>>>...>>......>>>
>>.............<<<....>>>...............<<<<<.....
.<.........................>........>>>>>.......<<
<<<(((...<<<<.........)))..........>>>>>>>>>..>>>>
>.................((......<<<...<......<..<.<<...<
<<<........<<<<.......>>>>......>>>>.....>>>..>...
...<<<<<<.....<<<<<......<.<.<.<..................
.....>.>.>..>..........<<....>>...>>>>>....>>.>>>>
.....>...>>>.....<<<<<.....<....<.............>...
.>..>>>>>..........<<<<<<..<<<<<<<<<<.........>>>>
>>>>>>...<<..))>>.....>>>>>>.....<<........<......
..>......>>...))).]..<...<<<<<<<.....<<<....<<<<<<
<...............................<<<<<<........<<<<
<.......<<<....>>>.......<<....>>...>>>>.>..<<<.<<
<..<.<<<........<<<<<<<<......>>....<........>....
>>>>>>............<<<..........<<.....>>.........>
>>.........<<<.....>>>........................>...
>>.>>>>>>>....>>>>>>.......>>>>>>>......<<.<......
.<<<..<<...<<<....>>>...>>....>>>.......>.>>......
......<<<<<.<........>.>>>>>............>>>.....<<
<..<...........>..>>>...........>>>>>>>..>........
.......<<<<.<.......<<<<<........<<.......<<..<<..
..>>.>>......>>.......>>>>>.......>.>>>>..........
.....<<<<<<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
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PDB2ykr Structural Basis for the Function of a Small Gtpase Rsga on the 30S Ribosomal Subunit Maturation Revealed by Cryoelectron Microscopy.
Resolution9.8 Å
Binding residue
(original residue number in PDB)		S1 M2 Q3 D4 A7 D8 T11 R12 R14 N15 S29 K30 L31 D53 T54 K55 R76 R79 P80 R83 Y85 K86 R87 K88 L91 S104 T105 S106 K107 G108 L120 G121 G122 E123
Binding residue
(residue number reindexed from 1)		S1 M2 Q3 D4 A7 D8 T11 R12 R14 N15 S29 K30 L31 D53 T54 K55 R76 R79 P80 R83 Y85 K86 R87 K88 L91 S104 T105 S106 K107 G108 L120 G121 G122 E123
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
GO:0006417 regulation of translation
GO:0043488 regulation of mRNA stability
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:2ykr, PDBe:2ykr, PDBj:2ykr
PDBsum2ykr
PubMed21788480
UniProtP0A7W7|RS8_ECOLI Small ribosomal subunit protein uS8 (Gene Name=rpsH)

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