Structure of PDB 1ub5 Chain H Binding Site BS01

Receptor Information

>1ub5 Chain H (length=209) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

EVKLLESGGGLVKPGGSLKLSCTASGITFSRYIMSWVRQIPEKRLEWVAS
ISSGGITYYPDSVAGRFTISRDNVRNILYLQMSSLRSEDTALYYCARGQG
RPYWGQGTLVTVSSAKTTPPSVYPAAPGCGDTTGSSVTLGCLVKGYFPEP
VTVTWNSGGSSVHTFPALLQSGLYTMSSSVTVPSSTWPSTVTCSVAHPAS
STTVDKKLE

Ligand information

Ligand ID

SPB

InChI

InChI=1S/C19H19NO3/c21-18(7-4-8-19(22)23)20-17-13-11-16(12-14-17)10-9-15-5-2-1-3-6-15/h1-3,5-6,9-14H,4,7-8H2,(H,20,21)(H,22,23)/b10-9+

InChIKey

FTXJWRRYLLRFMG-MDZDMXLPSA-N

SMILES

Software	SMILES
OpenEye OEToolkits 1.5.0	c1ccc(cc1)C=Cc2ccc(cc2)NC(=O)CCCC(=O)O
CACTVS 3.341	OC(=O)CCCC(=O)Nc1ccc(cc1)/C=C/c2ccccc2
OpenEye OEToolkits 1.5.0	c1ccc(cc1)\C=C\c2ccc(cc2)NC(=O)CCCC(=O)O
CACTVS 3.341	OC(=O)CCCC(=O)Nc1ccc(cc1)C=Cc2ccccc2
ACDLabs 10.04	O=C(Nc1ccc(cc1)\C=C\c2ccccc2)CCCC(=O)O

Formula

C19 H19 N O3

Name

4-(4-STYRYL-PHENYLCARBAMOYL)-BUTYRIC ACID;
5-OXO-5-({4-[(E)-2-PHENYLVINYL]PHENYL}AMINO)PENTANOIC ACID;
N-(TRANS-4-STILBENYL)-5-AMINO-5-OXO-PENTANOIC ACID

PDB chain

1ub5 Chain H Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	1ub5 Structure and Dynamics of Blue Fluorescent Antibody 19G2 at Blue and Violet Fluorescent Temperatures
Resolution	2.0 Å
Binding residue (original residue number in PDB)	I35 S37 Y96 G100 W106
Binding residue (residue number reindexed from 1)	I33 S35 Y94 G98 W104
Annotation score	1

Enzymatic activity

Enzyme Commision number

External links

PDB	RCSB:1ub5, PDBe:1ub5, PDBj:1ub5
PDBsum	1ub5
PubMed
UniProt	P01867\|IGG2B_MOUSE Immunoglobulin heavy constant gamma 2B (Gene Name=Ighg2b)

[Back to BioLiP]