Structure of PDB 1nam Chain H Binding Site BS01

Receptor Information
>1nam Chain H (length=275) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GPHSLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRAR
WMEQEGPEYWERETQKAKGNEQSFRVDLRTLLGYYNQSKGGSHTIQVISG
CEVGSDGRLLRGYQQYAYDGCDYIALNEDLKTWTAADMAALITKHKWEQA
GEAERLRAYLEGTCVEWLRRYLKNGNATLLRTDSPKAHVTHHSRPEDKVT
LRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVP
LGKEQYYTCHVYHQGLPEPLTLRWE
Ligand information
>1nam Chain P (length=8) Species: 11278 (Vesicular stomatitis Indiana virus strain Glasgow) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
RGYVYQGL
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1nam CDR3 loop flexibility contributes to the degeneracy of TCR recognition
Resolution2.7 Å
Binding residue
(original residue number in PDB)		Y7 V9 R62 E63 K66 N70 F74 D77 Y84 S99 Y116 T143 K146 W147 E152 R155 L156 Y159 W167 Y171
Binding residue
(residue number reindexed from 1)		Y7 V9 R62 E63 K66 N70 F74 D77 Y84 S99 Y116 T143 K146 W147 E152 R155 L156 Y159 W167 Y171
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:1nam, PDBe:1nam, PDBj:1nam
PDBsum1nam
PubMed12563259
UniProtP01901|HA1B_MOUSE H-2 class I histocompatibility antigen, K-B alpha chain (Gene Name=H2-K1)

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