Structure of PDB 4v4g Chain GG Binding Site BS01

Receptor Information
>4v4g Chain GG (length=155) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ARRRRAEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQ
EKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLAL
RWLVQAANQRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAY
AHYRW
Ligand information
>4v4g Chain GA (length=1526) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uggagaguuugauccuggcucagggugaacgcuggcggcgugccuaagac
augcaagucgugcggauacgcgcggccccuuggggccgugcgucagcggc
ggacgggugaguaacgcgugggugaccuacccggaagagggggacaaccc
ggggaaacucgggcuaaucccccauguggacgcaaguccaaagggggaag
ccuucgggucccccgcuuccggaugggcccgcgucccaucagcuaguugg
ugggguaauggcccaccaaggcgacgacggguagccggucugagaggaug
gccggccacaggggcacugagacacgggccccacuccuacgggaggcagc
aguuaggaaucuuccgcaaugggcgcaagccugacggagcgacgccgcuu
ggaggaagaagcccuucgggguguaaacuccugaacccgggacgaaacca
gggccacucauacuggcucugacugacgguaccgggguaauagcgccggc
caacuccgugccagcagccgcgguaauacggagggcgcgagcguuacccg
gauucacugggcguaaagggcguguaggcggccuggggcgucccauguga
aagaccacggcucaaccgugggggagcgugggauacgcucaggcuagacg
gugggagagggugguggaauucccggaguagcggugaaaugcgcagauac
cgggaggaacgccgauggcgaaggcagccaccugguccacccgugacgcu
gaggcgcgaaagcguggggagcaaaccggauuagauacccggguagucca
cgcccuaaacgaugcgcgcuaggucucuggcggcucaaccgcugggggcc
gaagcuaacgcguuaagcgcgccgccuggggaguacggccgcaaggcuga
aacucaaaggaauugacgggggcccgcacaagcgguggagcaugugguuu
aauucgaagcaacgcgaagaaccuuaccaggccuugacaugcuagggaac
ccgggugaaagccuggggugccuucgggagcccuagcacaggugcugcau
ggccgucgucagcucgugccgugagguguuggguuaagucccgcaacgag
cgcaacccccgccguuaguugccagcgguucggccgggcacucuaacggg
acugcccgcgaaagcgggaggaaggaggggacgacgucuggucagcaugg
cccuuacggccugggcgacacacgugcuacaaugcccacuacaaagcgau
gccacccggcaacggggagcuaaucgcaaaaaggugggcccaguucggau
uggggucugcaacccgaccccaugaagccggaaucgcuaguaaucgcgga
ucagccaugccgcggugaauacguucccgggccuuguacacaccgcccgu
cacgccaugggagcgggcucuacccgaagucgccggguaaccuacgggaa
gaggcgccgaggguagggcccgugacuggggcgaagucguaacaagguag
cuguaccggaaggugcggcuggauca
....<<<<....(((..>>>>.<<<<.<<<<<..<<<<<<<......<<<
.<<<..<<<..<<.....<<<<..<<<<....>>>>..>>>>...>>>>>
......<<.......<<<<<<<<..<<...<<...<<....<<....<<<
..........>>>.....>>........<<<....>>>......<<<<..
........>>>.>..>>...>>..>>>>>>>>>><<<....<<<....<<
<<..........>.>>>..>>>......>>>...<<.<<<<....>>>>.
...>>..>>.<<<<<............>>>>>...<<....>>.....>>
>>>>.........<<<....<<<<....>>>>..>>>...>.>>>>>>..
<<<<......<<<......>>>.....>>>>..<<<<<<<.........<
<<<<<<.......>>>>>>>...........>>>>>.>..>.<<<<<(((
...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>.
.........<<.(......<<<<...<<<.<<<<<<<.<<<<.<<<<...
......<<<<.....>>>>.......>>>>.>>>..>>>>>>>>...<<<
<<<<<...<<<<<<<....<<<<<<<....<<<......>>>.......>
>>>>>>...........<<....>>.>>>>>>>..>>>>>.>>>...>>>
...>>>>....<<<<<<...<<...<<<<.........>>>>...>>>>>
>>>..........<<<<<<..<<<<<<<<<<<<.....>>>>>>>>>>>>
...<<...)>>.....>>>>>>..>>.<<<......<<<<....>>>>..
..>>>...)))..<<<<<.<<<<<<<.<<..<<<<...<<<<<<<<<<..
....<<........>>..........<<<<<<.......<<<<<.<<...
<.<<<<....>>>>.>..............>>.>>>>>.<<..<<<..<<
<<<<.......<<<<<<<<<....>>>..<<<<......>>>>..>>>>>
>.....<<<<.<<<<<.....<...<<<.....>>>>.......>>>>>.
....<<<<<....>>>>>........>>>>.........>>>...>>>>>
>.>>....>>>>>>...>>.>>>>>>>>.....<<<<<<<.....<<<..
<<..<<<<....>>>>..>>....>>>.....>>>>>>>......<....
<<<<<<<........>>>>>>>....>......>>>>.....<<<<<<<.
.........>>>>>>>......>>...>>>>>>>>>>.>>.......<<.
..<<<<.<<<..<<<<<<<<<.<<....<.<<<<................
..>>>>.>...>>.>>>>>>>>>..>>>.>>>>....>>.........<<
<<.<<<<....>>>>.>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v4g Structural basis for the control of translation initiation during stress.
Resolution11.5 Å
Binding residue
(original residue number in PDB)		A2 R3 R4 R5 R6 L12 N28 K29 M31 D33 G34 K35 K36 R41 G82 R95 S98 R102 E113 R114 R115 R119
Binding residue
(residue number reindexed from 1)		A1 R2 R3 R4 R5 L11 N27 K28 M30 D32 G33 K34 K35 R40 G81 R94 S97 R101 E112 R113 R114 R118
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 15:36:46 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v4g', asym_id = 'GG', bs = 'BS01', title = 'Structural basis for the control of translation initiation during stress.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v4g', asym_id='GG', bs='BS01', title='Structural basis for the control of translation initiation during stress.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003723,0003735,0006412,0015935', uniprot = '', pdbid = '4v4g', asym_id = 'GG'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0003735,0006412,0015935', uniprot='', pdbid='4v4g', asym_id='GG')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>