Structure of PDB 4v4g Chain GE Binding Site BS01

Receptor Information
>4v4g Chain GE (length=150) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLA
VQKAGYYARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGVIAGA
VPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLRKG
Ligand information
>4v4g Chain GA (length=1526) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uggagaguuugauccuggcucagggugaacgcuggcggcgugccuaagac
augcaagucgugcggauacgcgcggccccuuggggccgugcgucagcggc
ggacgggugaguaacgcgugggugaccuacccggaagagggggacaaccc
ggggaaacucgggcuaaucccccauguggacgcaaguccaaagggggaag
ccuucgggucccccgcuuccggaugggcccgcgucccaucagcuaguugg
ugggguaauggcccaccaaggcgacgacggguagccggucugagaggaug
gccggccacaggggcacugagacacgggccccacuccuacgggaggcagc
aguuaggaaucuuccgcaaugggcgcaagccugacggagcgacgccgcuu
ggaggaagaagcccuucgggguguaaacuccugaacccgggacgaaacca
gggccacucauacuggcucugacugacgguaccgggguaauagcgccggc
caacuccgugccagcagccgcgguaauacggagggcgcgagcguuacccg
gauucacugggcguaaagggcguguaggcggccuggggcgucccauguga
aagaccacggcucaaccgugggggagcgugggauacgcucaggcuagacg
gugggagagggugguggaauucccggaguagcggugaaaugcgcagauac
cgggaggaacgccgauggcgaaggcagccaccugguccacccgugacgcu
gaggcgcgaaagcguggggagcaaaccggauuagauacccggguagucca
cgcccuaaacgaugcgcgcuaggucucuggcggcucaaccgcugggggcc
gaagcuaacgcguuaagcgcgccgccuggggaguacggccgcaaggcuga
aacucaaaggaauugacgggggcccgcacaagcgguggagcaugugguuu
aauucgaagcaacgcgaagaaccuuaccaggccuugacaugcuagggaac
ccgggugaaagccuggggugccuucgggagcccuagcacaggugcugcau
ggccgucgucagcucgugccgugagguguuggguuaagucccgcaacgag
cgcaacccccgccguuaguugccagcgguucggccgggcacucuaacggg
acugcccgcgaaagcgggaggaaggaggggacgacgucuggucagcaugg
cccuuacggccugggcgacacacgugcuacaaugcccacuacaaagcgau
gccacccggcaacggggagcuaaucgcaaaaaggugggcccaguucggau
uggggucugcaacccgaccccaugaagccggaaucgcuaguaaucgcgga
ucagccaugccgcggugaauacguucccgggccuuguacacaccgcccgu
cacgccaugggagcgggcucuacccgaagucgccggguaaccuacgggaa
gaggcgccgaggguagggcccgugacuggggcgaagucguaacaagguag
cuguaccggaaggugcggcuggauca
....<<<<....(((..>>>>.<<<<.<<<<<..<<<<<<<......<<<
.<<<..<<<..<<.....<<<<..<<<<....>>>>..>>>>...>>>>>
......<<.......<<<<<<<<..<<...<<...<<....<<....<<<
..........>>>.....>>........<<<....>>>......<<<<..
........>>>.>..>>...>>..>>>>>>>>>><<<....<<<....<<
<<..........>.>>>..>>>......>>>...<<.<<<<....>>>>.
...>>..>>.<<<<<............>>>>>...<<....>>.....>>
>>>>.........<<<....<<<<....>>>>..>>>...>.>>>>>>..
<<<<......<<<......>>>.....>>>>..<<<<<<<.........<
<<<<<<.......>>>>>>>...........>>>>>.>..>.<<<<<(((
...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>.
.........<<.(......<<<<...<<<.<<<<<<<.<<<<.<<<<...
......<<<<.....>>>>.......>>>>.>>>..>>>>>>>>...<<<
<<<<<...<<<<<<<....<<<<<<<....<<<......>>>.......>
>>>>>>...........<<....>>.>>>>>>>..>>>>>.>>>...>>>
...>>>>....<<<<<<...<<...<<<<.........>>>>...>>>>>
>>>..........<<<<<<..<<<<<<<<<<<<.....>>>>>>>>>>>>
...<<...)>>.....>>>>>>..>>.<<<......<<<<....>>>>..
..>>>...)))..<<<<<.<<<<<<<.<<..<<<<...<<<<<<<<<<..
....<<........>>..........<<<<<<.......<<<<<.<<...
<.<<<<....>>>>.>..............>>.>>>>>.<<..<<<..<<
<<<<.......<<<<<<<<<....>>>..<<<<......>>>>..>>>>>
>.....<<<<.<<<<<.....<...<<<.....>>>>.......>>>>>.
....<<<<<....>>>>>........>>>>.........>>>...>>>>>
>.>>....>>>>>>...>>.>>>>>>>>.....<<<<<<<.....<<<..
<<..<<<<....>>>>..>>....>>>.....>>>>>>>......<....
<<<<<<<........>>>>>>>....>......>>>>.....<<<<<<<.
.........>>>>>>>......>>...>>>>>>>>>>.>>.......<<.
..<<<<.<<<..<<<<<<<<<.<<....<.<<<<................
..>>>>.>...>>.>>>>>>>>>..>>>.>>>>....>>.........<<
<<.<<<<....>>>>.>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB4v4g Structural basis for the control of translation initiation during stress.
Resolution11.5 Å
Binding residue
(original residue number in PDB)		R14 R15 T16 A17 R18 M19 Q20 A21 G22 R24 F26 R27 F28 F45 K47 Y60 E83 G85 A86 I101 A102 A104 R107 L119 K121 L123 S125 R126 N127 N130 Y133
Binding residue
(residue number reindexed from 1)		R10 R11 T12 A13 R14 M15 Q16 A17 G18 R20 F22 R23 F24 F41 K43 Y56 E79 G81 A82 I97 A98 A100 R103 L115 K117 L119 S121 R122 N123 N126 Y129
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 15:30:14 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v4g', asym_id = 'GE', bs = 'BS01', title = 'Structural basis for the control of translation initiation during stress.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v4g', asym_id='GE', bs='BS01', title='Structural basis for the control of translation initiation during stress.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003723,0003735,0005840,0006412,0015935', uniprot = '', pdbid = '4v4g', asym_id = 'GE'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0003735,0005840,0006412,0015935', uniprot='', pdbid='4v4g', asym_id='GE')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>